View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_14 (Length: 477)
Name: NF11446_low_14
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 460
Target Start/End: Complemental strand, 23182577 - 23182112
Alignment:
| Q |
13 |
atgaatacaaatgttgcatcatcttcatcaaaccttaatctgccaactgctacaagtttgaatacttcaagtacagat------------------tcat |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
23182577 |
atgaatacaaatgttgcatcatcttcatcaaaccttaatctgccaactgctacaagtttgaatacttcaagtatagatacacatgtcaactatgattcat |
23182478 |
T |
|
| Q |
95 |
ctgaaggtaataataacaatagcatgtaacattattaataaaataggtgcatgatctaatctaaaaatataataataccttcaggttcaagtgatgatag |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23182477 |
ctgaaggtaataataacaatagcatgtaacattattaataaaataggtgcatgatctaatctaaaaatataataataccttcaggttcaagtgatgatag |
23182378 |
T |
|
| Q |
195 |
ttactcaagtcttgatgaagaagaaacacatacaaataacaaagttatgggttatgacattcttactgaaggtagtttaatttaaaaccattaatataaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23182377 |
ttactcaagtcttgatgaagaagaaacacatacaaataacaaagttatgggttatgacattcttactgaaggtagtttaatttaaaaccattaatataaa |
23182278 |
T |
|
| Q |
295 |
gtgcacaacaatacaattgtatagttgatattattttggtgttattcgttataggttattatgatcatggtgatccactcattgaatgtcagtattgtgg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23182277 |
gtgcacaacaatacaattgtatagttgatattattttggtgttattcgttataggttattatgatcatggtgatccactcattgaatgtcagtattgtgg |
23182178 |
T |
|
| Q |
395 |
agcgaaaatgtggtaccaagagagaatgnnnnnnnntacacattctgcaaatcctaagtaccaact |
460 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23182177 |
agcaaaaatgtggtaccaagagagaatgaaaaaaaatacacattctgcaaatcctaagtaccaact |
23182112 |
T |
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