View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11446_low_16 (Length: 469)

Name: NF11446_low_16
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11446_low_16
NF11446_low_16
[»] chr5 (1 HSPs)
chr5 (5-398)||(12845285-12845673)
[»] chr4 (3 HSPs)
chr4 (297-339)||(6006077-6006119)
chr4 (46-96)||(12123430-12123480)
chr4 (291-331)||(1553048-1553088)
[»] chr3 (2 HSPs)
chr3 (42-96)||(51120949-51121003)
chr3 (113-173)||(37580947-37581007)
[»] chr8 (3 HSPs)
chr8 (290-335)||(18315514-18315559)
chr8 (294-338)||(17628318-17628362)
chr8 (291-331)||(32151059-32151099)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 398
Target Start/End: Complemental strand, 12845673 - 12845285
Alignment:
Q  5 ccaaattagaggtattgaacttgtcccggtccgtgactgatgatgaagcactatatgcaatctcaaagagttgtcgtggtctattgcaattggacctgga 104  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12845673 ccaaattagaggtattgaacttgtcccggtccgcgaccgatgatgaagcactatatgcaatctcaaagagttgttgtggtctattgcaattggacctgga 12845574  T
Q  105 aagtggttatgatgttacagagaagatagtgaggcaagtagtagaaaaatgcagaaagctgagagagatcaatcaatttgagggattgtcaaaatgtggc 204  Q
    || | || |||||||||||||||||  |||||||||||| |||| |||||||| |||| ||||||||||    |||||||||||||||||||||||||||    
T  12845573 aaattgtaatgatgttacagagaagggagtgaggcaagtggtagcaaaatgcacaaagttgagagagat----caatttgagggattgtcaaaatgtggc 12845478  T
Q  205 tggtaatgttgtttccgagattgtactttcaaggccatcgttgaggaagctaacgattccccctttttatcgtcctattgatcacgaaagggaactcttc 304  Q
    ||||||||||||||| ||||| ||||||||||||||||| || || ||| |||| ||||| |||||||||| ||||| |||||| |||||||||||||||    
T  12845477 tggtaatgttgtttctgagatggtactttcaaggccatcattaagaaagataacaattcctcctttttatcatcctagtgatcatgaaagggaactcttc 12845378  T
Q  305 ttgcatcatggatgccttgtttgctagcattttgggaagttctctgccaaagtatgaaatataagatgtttatgtttccaaagttacttctttg 398  Q
    |||||||||||||||||||||| |||| | ||  ||| ||  ||||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  12845377 ttgcatcatggatgccttgttttctagta-ttccggacgtgatctgccaaagtataaaatgtaagatgtttatgtttccagagttacttctttg 12845285  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 6006119 - 6006077
Alignment:
Q  297 aactcttcttgcatcatggatgccttgtttgctagcattttgg 339  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  6006119 aactcttcttgcgtcatggatgccttgtttgctagtattttgg 6006077  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 12123430 - 12123480
Alignment:
Q  46 gatgaagcactatatgcaatctcaaagagttgtcgtggtctattgcaattg 96  Q
    ||||||||||| ||||||||| |||| ||||||||||| || |||||||||    
T  12123430 gatgaagcactttatgcaatcccaaaaagttgtcgtgggcttttgcaattg 12123480  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 1553048 - 1553088
Alignment:
Q  291 aaagggaactcttcttgcatcatggatgccttgtttgctag 331  Q
    ||||||||||||||| |||||| ||||| ||||||||||||    
T  1553048 aaagggaactcttctcgcatcaaggatgtcttgtttgctag 1553088  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 51120949 - 51121003
Alignment:
Q  42 tgatgatgaagcactatatgcaatctcaaagagttgtcgtggtctattgcaattg 96  Q
    ||||||||||  |||||||| ||||||||||||||||||||| || |||||||||    
T  51120949 tgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattg 51121003  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 37580947 - 37581007
Alignment:
Q  113 atgatgttacagagaagatagtgaggcaagtagtagaaaaatgcagaaagctgagagagat 173  Q
    ||||||| |||||||||  |||||| | ||||||||||||||||| | | |||||||||||    
T  37580947 atgatgtcacagagaagggagtgagactagtagtagaaaaatgcatacacctgagagagat 37581007  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 18315514 - 18315559
Alignment:
Q  290 gaaagggaactcttcttgcatcatggatgccttgtttgctagcatt 335  Q
    |||||||||||||||| || |||  |||||||||||||||||||||    
T  18315514 gaaagggaactcttctcgcgtcaaagatgccttgtttgctagcatt 18315559  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 17628318 - 17628362
Alignment:
Q  294 gggaactcttcttgcatcatggatgccttgtttgctagcattttg 338  Q
    ||||| |||||| || ||||||||||| |||||||||||||||||    
T  17628318 gggaagtcttctcgcttcatggatgccatgtttgctagcattttg 17628362  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 32151099 - 32151059
Alignment:
Q  291 aaagggaactcttcttgcatcatggatgccttgtttgctag 331  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  32151099 aaaggaaactcttcttgcgtcatggatgccttgtttcctag 32151059  T

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