View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11446_low_19 (Length: 443)
Name: NF11446_low_19
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 37111413 - 37111826
Alignment:
| Q |
11 |
cagagaaaggagcatcaacatttagttctttgtaattctgcataagacacagtgttgctgccagtaagcaatagattattgttgtaatcgtcattgaacc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37111413 |
cagagaaaggagcatcaacatttagttctttgtaattctgcataagacacagtgttgctgccagtaagcaataaattattgttgtaatcgtcattgaacc |
37111512 |
T |
|
| Q |
111 |
aactagaccaattggaatgtctctaccagggttcttggtttcttcagccatggttgaaacagcatcaaagccaacataagcaaagaaaagtacagctgaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37111513 |
aactagaccaattggaatgtctctaccagggttcttggtttcttcagccatggttgaaacagcatcaaagccaacataagcaaagaaaagtacagcggaa |
37111612 |
T |
|
| Q |
211 |
gcattgaccataccgtgaagcccgaaaggagtgaagtcattgaagttttcgggtttggctttgattagaccggcgataactatgaagataatgacagcca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37111613 |
gcattgaccataccgtgaagcccgaaaggagtgaagtcattgaagttttcgggtttggctttgattagaccggcgataactatgaagataatgacagcca |
37111712 |
T |
|
| Q |
311 |
tgtgtaagagtgtggctatgtagttgaagatggaagagcctttggtgctgtaaactgcaagggctgttatggctactagagctgcaatagcaatagggtc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37111713 |
tgtgtaagagtgtggctatgtagttgaagatggaagagcctttggtgctgtaaactgcaagggctgtgatggctactagagctgcaatagcaatagggtc |
37111812 |
T |
|
| Q |
411 |
aagatggccatagt |
424 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37111813 |
aagatggccatagt |
37111826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 37119670 - 37120079
Alignment:
| Q |
13 |
gagaaaggagcatcaacatttagttctttgtaattctgcataagacacagtgttgctgccagtaagcaatagattattgttgtaatcgtcattgaaccaa |
112 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||| ||||||||| | ||||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
37119670 |
gagaaaggagcatcagtatcaagttctttgtaattctgcataagacaaagtgttgctcctagtaagcaatatattgctgttgtaatcgtcattgatccaa |
37119769 |
T |
|
| Q |
113 |
ctagaccaattggaatgtctctaccagggttcttggtttcttcagccatggttgaaacagcatcaaagccaacataagcaaagaaaagtacagctgaagc |
212 |
Q |
| |
|
||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
37119770 |
ctagaccgataggaatgtctctaccagggtttttagtttcttcagccatggttgaaacagcatcaaagccaatataagcaaagaaaagaacagccgaaga |
37119869 |
T |
|
| Q |
213 |
attgaccataccgtgaagcccgaaaggagtgaagtcattgaagttttcgggtttggctttgattagaccggcgataactatgaagataatgacagccatg |
312 |
Q |
| |
|
| ||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37119870 |
actgaccattccatgcaacccgaaaggagtgaagtcattgaagttttcgggtttggctttgattagaccggcgattactatgaagataatgacagccatg |
37119969 |
T |
|
| Q |
313 |
tgtaagagtgtggctatgtagttgaagatggaagagcctttggtgctgtaaactgcaagggctgttatggctactagagctgcaatagcaatagggtcaa |
412 |
Q |
| |
|
|| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
37119970 |
tggaacattgtggctatgtagttgaagatggaagaacctttggtgctgtaaactgcaagagctgtgatggctactagggctccaatagcaatagggtcaa |
37120069 |
T |
|
| Q |
413 |
gatggccata |
422 |
Q |
| |
|
|||||||||| |
|
|
| T |
37120070 |
gatggccata |
37120079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 37136557 - 37136390
Alignment:
| Q |
39 |
tttgtaattctgcataagacacagtgttgctgccagtaagcaatagattattgttgtaatcgtcattgaaccaactagaccaattggaatgtctctacca |
138 |
Q |
| |
|
|||||| ||||||||||| || ||||||| ||| ||| ||||||| || | || |||| |||||| || || |||||||| ||||||||||| ||| |
|
|
| T |
37136557 |
tttgtagttctgcataaggcatagtgttgttgctagtgagcaatatatgaaagtgataattaccattgatcctacaagaccaataggaatgtctctgcca |
37136458 |
T |
|
| Q |
139 |
gggttcttggtttcttcagccatggttgaaacagcatcaaagccaacataagcaaagaaaagtacagc |
206 |
Q |
| |
|
||||| || ||||| || ||||| ||||| || ||||||||||| | |||||||||||||| ||||| |
|
|
| T |
37136457 |
gggtttttagtttcctcggccatagttgacactgcatcaaagcctatgtaagcaaagaaaagaacagc |
37136390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 10681013 - 10680912
Alignment:
| Q |
90 |
tgttgtaatcgtcattgaaccaactagaccaattggaatgtctctaccagggttcttggtttcttcagccatggttgaaacagcatcaaagccaacataa |
189 |
Q |
| |
|
|||||||| |||||||| || | ||||||||| || || ||| | ||||| ||||| ||||| |||||||| || ||||| ||||| || ||||||||| |
|
|
| T |
10681013 |
tgttgtaagtgtcattgatcctattagaccaatagggatatcttttccaggattcttcgtttcctcagccattgtcgaaactgcatcgaatccaacataa |
10680914 |
T |
|
| Q |
190 |
gc |
191 |
Q |
| |
|
|| |
|
|
| T |
10680913 |
gc |
10680912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University