View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_20 (Length: 436)
Name: NF11446_low_20
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 876740 - 876995
Alignment:
| Q |
1 |
attcatatttattatttaacttcataaacaaaattgaggcgtttcaatgtcaatagagttgaaacctctttgaatcaagatatttttgaaacctcctctt |
100 |
Q |
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| T |
876740 |
attcatatttattatttaacttcataaacaaaattgaggcgtttcaatatcaatagagttgaaacctctttgaatcaagatatttttgaaacctcctctt |
876839 |
T |
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| Q |
101 |
aaatctctaatagaagtatcaattttattaatcagccatttgatttttctgaaaccnnnnnnntcaaagacgttgacaaagctaagaaactaaaacaaat |
200 |
Q |
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| T |
876840 |
aaatctctaacagaagtatcaattttattaatcagccatttgatttttctgaaaccaaaaaaatcaaagacgttgacaaagctaagaaactaaaacaaat |
876939 |
T |
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| Q |
201 |
aaaattaattctgtgaaattatagataaaaataatagaagagattagaaacaaact |
256 |
Q |
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| T |
876940 |
aaaattaattctgtgaaattatagataaaaataatagaagagattagaaataaact |
876995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 846292 - 846449
Alignment:
| Q |
1 |
attcatatttattatttaacttcataaacaaaattgaggcgtttcaatgtcaatagagttgaaacctctttgaatcaagatatttttgaaacctcctctt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
846292 |
attcatatttattatttaacttcatgaacaaaattgaggcgtttcaatgtcaatagagttgaaacctctttgaatcaagacatttttgaaacttcctctt |
846391 |
T |
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| Q |
101 |
aaatctctaatagaagtatc--aattttat---taatcagccatttgatttttctgaa |
153 |
Q |
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| T |
846392 |
aaatctctaatattagtatcataattttattccttatcagccatttgatttttctgaa |
846449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 323 - 434
Target Start/End: Original strand, 877157 - 877268
Alignment:
| Q |
323 |
gtagatgtggatatatgtgtatgattatagatctttgaatgagttcaagtctcggtcaacccaactaggttgacacggcaaaagttatggtgcataaaca |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
877157 |
gtagatgtggatatatgtgtatgattatagatctttgaatgagttcaagtctcggtcaacccaactaggttgacacagaaaaagttatggtgcataaaca |
877256 |
T |
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| Q |
423 |
cttcacaaccat |
434 |
Q |
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| T |
877257 |
cttcacaaccat |
877268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 179630 - 179670
Alignment:
| Q |
396 |
cacggcaaaagttatggtgcataaacacttcacaaccatca |
436 |
Q |
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| T |
179630 |
cacggcaaaagttatggtgcataaacacttcacaaccatca |
179670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 10497314 - 10497346
Alignment:
| Q |
402 |
aaaagttatggtgcataaacacttcacaaccat |
434 |
Q |
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| T |
10497314 |
aaaagttatggtggataaacacttcacaaccat |
10497346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 49138119 - 49138087
Alignment:
| Q |
402 |
aaaagttatggtgcataaacacttcacaaccat |
434 |
Q |
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| T |
49138119 |
aaaagttacggtgcataaacacttcacaaccat |
49138087 |
T |
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