View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_21 (Length: 432)
Name: NF11446_low_21
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 36738330 - 36737931
Alignment:
| Q |
12 |
gaactggagaaaagtgctgggaaggaaatccgttaccgcggtgtgaggaagcgaaaacacaaatatggtgcagaaattcgaaatccctggaaaaaacaat |
111 |
Q |
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| T |
36738330 |
gaactggagaaaagtgctgggaaggaaatccgttaccgcggtgtgaggaagcgaaaacacaaatatggtgcagaaattcgaaacccctggaaaaaacaat |
36738231 |
T |
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| Q |
112 |
gtgaatggttaggcacttacaatactgcagagcaagcagccagagcttacgatgcagcagctatttcattccgtggggtcaatgccattacaaacttccc |
211 |
Q |
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| T |
36738230 |
gtgaatggttaggcacttacaatactgcagagcaagcagcccgagcttacgatgcagcagctatttcattccgtggggtcaatgccattacaaacttccc |
36738131 |
T |
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| Q |
212 |
aataccttacaa---tgcttctactgctatgagtagtactgctgaagcatctagggttgttgttggttcttcttcagccattgtttctagggttcttgct |
308 |
Q |
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| T |
36738130 |
aataccttacaatattgcttctactgctatgagtagtactgctgaagcatctagggttgttgttgg---ttcttcaacaattgtttctagggttcttgct |
36738034 |
T |
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| Q |
309 |
gctactcctagacctcttgttgctgctgaaggttgtcacagtaaatgtgattcttcttctgttgctgatgatgaagatgaagattgtgttatcatttctt |
408 |
Q |
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| T |
36738033 |
gctactcctagacctcttgttgctgctgaaggttgtcacagtaaatgtgattcttcttctgttgcggatgatgaagatgaagattgtgttatcatttctt |
36737934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 409
Target Start/End: Complemental strand, 36735339 - 36735015
Alignment:
| Q |
79 |
gtgcagaaattcgaaatccctggaaaaaacaatgtgaatggttaggcacttacaatactgcagagcaagcagccagagcttacgatgcagcagctatttc |
178 |
Q |
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| T |
36735339 |
gtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccacttc |
36735240 |
T |
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| Q |
179 |
attccgtggggtcaatgccattacaaacttcccaataccttacaatgcttctactgctatgagtagtactgctgaagcatctagggttgttgttggttct |
278 |
Q |
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| T |
36735239 |
ataccgtgggaacaatgccataacaaacttcccaataccttacaatgccgc---------gaacagtgttgttgaagcatctagggttgctgttggttct |
36735149 |
T |
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| Q |
279 |
tcttcagccattgtttctagggttcttgctgctactcctagacctcttgttgctgctgaaggttgtcacagtaaatgtgattcttcttctgttgct---g |
375 |
Q |
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| T |
36735148 |
tcttcaaccgttgtttctagggttcctgttgctacttctatacctgctattgtaggtgaagatcgtcacaatgattttgatgcttcttctgttgatgtgg |
36735049 |
T |
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| Q |
376 |
atgatgaagatgaagattgtgttatcatttcttc |
409 |
Q |
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||||||| || |||||||||||||||| |||||| |
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| T |
36735048 |
atgatgatgaagaagattgtgttatcacttcttc |
36735015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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