View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_23 (Length: 413)
Name: NF11446_low_23
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 5473786 - 5474055
Alignment:
| Q |
19 |
atgtcaccacaagcggtgagtccaggattagtcaggccagatatcttgcatgaaagggacaccaaatacaaaatttcctcagagagccttaaaagctcga |
118 |
Q |
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| T |
5473786 |
atgtcaccacaagcggtgagtccaggattagtgaggccagatatcttgcatgagagggacaccaaatacaaaatttcctcagagagccttaaaagctcga |
5473885 |
T |
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| Q |
119 |
ggattgagattccagaaccagagatgatccacccaatggctgactattggaaacagcatggaaaaggttttgtcattgacttccaagaaactgagatgaa |
218 |
Q |
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| T |
5473886 |
ggattgagattccagagccagagatgatccacccaatggctgactattggaagcaacatggcaaaggctttgtcattgactttgaagaaactgaaatgaa |
5473985 |
T |
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| Q |
219 |
aaagagggctcctttcccttga--atatagctatatagta-gtatatgtgatcttaagtgaataaagcata |
286 |
Q |
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| T |
5473986 |
aaagagggctccttttccttgaacatatagatata-actatatatatgtaatcttgagtgaataaagcata |
5474055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 5479943 - 5479996
Alignment:
| Q |
94 |
tcctcagagagccttaaaagctcgaggattgagattccagaaccagagatgatc |
147 |
Q |
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| T |
5479943 |
tcctcagcgagcctgaaaagctcgaggattgagattccagatccataaatgatc |
5479996 |
T |
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