View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_26 (Length: 410)
Name: NF11446_low_26
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 54237074 - 54237450
Alignment:
| Q |
18 |
agaaatgacattaataaatatattgtagattaaaaaatgcacaagtggtcgtgtaagtatagcttagttagtagtggggaaagactttagacccctatat |
117 |
Q |
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| T |
54237074 |
agaaatgacattaataaatatattgtagattaaaaaatgcacaagtggtagtgtaagtatagcttagttagtagtggggaaagactttagacccctatat |
54237173 |
T |
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| Q |
118 |
atttgttaccgatcaaccgtgactaaatcagacatttacaatagagcgtccaaattgtataaaatggcattgcatgttggattcgaatccataattctcc |
217 |
Q |
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| T |
54237174 |
atttgttaccgatcaaccgtgactaaatcagacatttacaatagagcgtccaaattgtataaaatggcactgcatgtcggattcgaatccataattctcc |
54237273 |
T |
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| Q |
218 |
gtttttccacacatatgtttggtcaaatctttatgccaatagacaaaaaaaaatgcacaagtgccannnnnnnnnnnnnnnnnnnaaggaaaaatgcaca |
317 |
Q |
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| T |
54237274 |
gtttttccacacatatg-ttggtcaaatctttatgccaatagacaaaaaaaaatgcacaagtgcc-ttttttttttttcttttttaaggaaaaatgcaca |
54237371 |
T |
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| Q |
318 |
agtgctgttaattattagtaagtaaggaattaacccgaaggcattttatttggaatatgaggttgctaagttggtgtctctg |
399 |
Q |
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| T |
54237372 |
agtgctgttaattattagtaagtaaggaattaacccgaaggcattttgtttggaatat---gttgctaagttggtgtctctg |
54237450 |
T |
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