View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11446_low_27 (Length: 409)
Name: NF11446_low_27
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 38634662 - 38635044
Alignment:
| Q |
18 |
gtaccgaaccagaaagacataaggagtaggaactgtcaaataccattcaagatttctcaagattgttttctccataaccagaacctgttctctaacatat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38634662 |
gtaccgaaccagaaagacataaggagtaggaactgtcaaataccattcaagatttctcaagattgttttctccataaccagaacctgttctctaacatat |
38634761 |
T |
|
| Q |
118 |
gcattgtctgatatgcatacaaaatcattgacctgtatacacaaatgaaacaaagacattcaataaaccatatagcatatagacacatttgataaaccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38634762 |
gcattgtctgatatgcatacaaaatcattgacctgtatacacaaatgaaacaaagacattcaataaaccatatagcatatagacacatttgataaaccat |
38634861 |
T |
|
| Q |
218 |
atacaagataaaaggagttctacctctggtgcccaaatctcttcatactttgatgcaataagcattgagcttatgccaacaagctgaagttcctttctag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38634862 |
atacaagataaaaggagttctacctctggtgcccaaatctcttcatactttgatgcaataagcattgagcttatgccaacaagctgaagttcctttctag |
38634961 |
T |
|
| Q |
318 |
gtacagcctttgtggacaagaatcggtcaacaatgttgagagtcagatagaacgtttccggcatgagttcaaatttcctatgc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38634962 |
gtacagcctttgtggacaagaatcggtcaacaatgttgagagtcagatagaacgtttccggcatgagttcaaatttcctatgc |
38635044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 38617804 - 38617854
Alignment:
| Q |
334 |
caagaatcggtcaacaatgttgagagtcagatagaacgtttccggcatgag |
384 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||| ||||| |||||||| |
|
|
| T |
38617804 |
caagaatcgatcaacaatattaagagtcagatagaaagtttctggcatgag |
38617854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University