View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_29 (Length: 404)
Name: NF11446_low_29
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 38402639 - 38403042
Alignment:
| Q |
1 |
aaccacagatggaagtatcctccttgtctcttttgttagactcagaatctgcacagaaggataaatagatcatgaaaatacaagaaaactaagtgtgagt |
100 |
Q |
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| T |
38402639 |
aaccacagatggaagtatcctccttgtctcttttgttagactcagaatctgcacagaaggataaatagatcatgaaaatacaagaaaactaagtgtgagt |
38402738 |
T |
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| Q |
101 |
ttctgttgatgactgtgttatttaaaatcagtaacaatatgctaacattcaatacaaatataaattaagagttaatttatatacacctttaatttatgta |
200 |
Q |
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| T |
38402739 |
ttctgttgatgactgtgttatttaaaatcagtaacaatatgctaacattcaatacaaatataaattaagagttaatttatatacacctttaatttatgta |
38402838 |
T |
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| Q |
201 |
cacctttagtcaatcaatcataattgtttaatcattagaaaagcttgactttcattatacctagcttaaataaaagtcatgcaaatgatggttggctgat |
300 |
Q |
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| T |
38402839 |
cacctttagtcaatcaatcataattgtttaatcattaaaaaagcttgactttcattatacctagcttaaataaaagtcatgcaaatgatggttggttgat |
38402938 |
T |
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| Q |
301 |
attgtataacatattacattgacagtacatcaaaattattctctacaaatcattgtccttttgttccgtgaattttagtgacaaccatacacattcatga |
400 |
Q |
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| T |
38402939 |
aatgtaaaacattttacactgacagtacatcaaaattattctctacatatcattgtccttttgttccgtgaattttagtgactaccatacacattcatga |
38403038 |
T |
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| Q |
401 |
ttga |
404 |
Q |
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|||| |
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| T |
38403039 |
ttga |
38403042 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 38762284 - 38762255
Alignment:
| Q |
208 |
agtcaatcaatcataattgtttaatcatta |
237 |
Q |
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| T |
38762284 |
agtcaatcaatcataattgtttaatcatta |
38762255 |
T |
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