View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_3 (Length: 631)
Name: NF11446_low_3
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 581; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 10 - 614
Target Start/End: Complemental strand, 54689631 - 54689027
Alignment:
| Q |
10 |
gcagagagcttttgaggtttgtttctacagcaacttccattttctcttgtctgaaaaagaaagatgactatgagatcagaaaacatgtcagggttatagt |
109 |
Q |
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| T |
54689631 |
gcagagagcttttggggtttgtttctacagcaacttccattttctcttgtctgaaaaagaaagatgactatgagatcagaaaacatgtcagggttatagt |
54689532 |
T |
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| Q |
110 |
agttgttatcttctcaatataaagcaaataattacaggagacaagaatcgtattttatattttaaaattcaactggtagtgctaaggggcaatataatta |
209 |
Q |
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| T |
54689531 |
agttgttatcttctcaatataaagcaaataattacaggagacaagaatcgtattttatattttaaaattcaactggtagtgctaaggggcaatataatta |
54689432 |
T |
|
| Q |
210 |
gaggggcatgcatgtgatgagagtaaacatggaaactggatcatgtgtctgcaggagaagaagcagttttatttataaataatttgttacgatccgtttt |
309 |
Q |
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| T |
54689431 |
gaggggcgtgcatgtgatgagagtaaacatggaaactggatcatgtgtctgcaggagaagaagcagttctatctataaataatttgttacaatccgtttt |
54689332 |
T |
|
| Q |
310 |
aatcaaatacacgtgtattgtatcttcatactcttgctagaataataaacatattgaacaaaacacctcaactcctagcctatgaggaagtcaatggtat |
409 |
Q |
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| T |
54689331 |
aatcaaatacacgtgtattgtatcttcatactcttgctagaataataaacatattgaacaaaacacctcaactcctagcctatgaggaagtcaatggtat |
54689232 |
T |
|
| Q |
410 |
ccattgatgttaacatatgtttaaatgggtgatctgattcgtgttcctccaacagagacatgcctaacaatactgcagttgttgctttggcatcacagca |
509 |
Q |
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| T |
54689231 |
ccattgatgttaacatatgtttaaatgggtgatctgattcgtgttcctccaacagagacatgcctaacaatactgcagttgttgctttggcatcacagca |
54689132 |
T |
|
| Q |
510 |
gtactacacatgtgcaaatggttatgtttacaattaaaaacacgttttcggtgaagcatctgtattgaaaatgttataatcatgcaaatgagacagatta |
609 |
Q |
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| T |
54689131 |
gtactacacatgtgcaaatggttatgtttacgattaaaaacacgttttcggtgaagcatctgtattgaaaatgttataatcatgcaaatgagacagatta |
54689032 |
T |
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| Q |
610 |
tgagt |
614 |
Q |
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||||| |
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| T |
54689031 |
tgagt |
54689027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 54701242 - 54701109
Alignment:
| Q |
231 |
agtaaacatggaaactggatcatgtgtctgcaggagaagaagcagttttatttataaataatttgttacgatccgttttaatcaaatacacgtgtattgt |
330 |
Q |
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|||||||||||||| |||||| |||||||| || || ||||||| || |||||||||||||||||||| |||| ||||||||||| |||||||||||||| |
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| T |
54701242 |
agtaaacatggaaagtggatcttgtgtctgtagtaggagaagcatttatatttataaataatttgttatgatctgttttaatcaagtacacgtgtattgt |
54701143 |
T |
|
| Q |
331 |
atcttcatactcttgctagaataataaacatatt |
364 |
Q |
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| T |
54701142 |
atcttcatactcttgctacaataataaagatatt |
54701109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 489 - 614
Target Start/End: Complemental strand, 54701101 - 54700974
Alignment:
| Q |
489 |
tgttgctttggcatcacagcagt--actacacatgtgcaaatggttatgtttacaattaaaaacacgtttt-cggtgaagcatctgtattgaaaatgtta |
585 |
Q |
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||||||||| |||||||||||| |||| |||||||||||||||||| |||| ||||||| ||| |||| ||||||||||| || ||||||||||||| |
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| T |
54701101 |
tgttgctttagcatcacagcagagaactaaacatgtgcaaatggttatatttaagattaaaa-cacatttttcggtgaagcatttgcattgaaaatgtta |
54701003 |
T |
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| Q |
586 |
taatcatgcaaatgagacagattatgagt |
614 |
Q |
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||||||||||||||||||||| ||||||| |
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| T |
54701002 |
taatcatgcaaatgagacagagtatgagt |
54700974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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