View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_30 (Length: 391)
Name: NF11446_low_30
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 50676963 - 50677329
Alignment:
| Q |
10 |
gcagagaagattcgaacgaagtagagataagggctgaagataatgagtgaaacaagtgggaaggttccgtcggaggtttttccgagaagtaagggaagat |
109 |
Q |
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| T |
50676963 |
gcagagaagattcgaacgaagtagagataagggctgaagataatgagtgaaacaagtgggaaggttccgtcggaggtttttccgagaagtaagggaagat |
50677062 |
T |
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| Q |
110 |
cgatggatgggtgtgatgcgattgaaaccagaaatgagactaaggatgaatagaggaatggaatggatagaattaaaaaacctaggttttttaggtatgc |
209 |
Q |
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| T |
50677063 |
cgatggatgggtgtgatgcgattgaaacgagaaatgagactaaggatgaatagaggaatggaatggatagaattaagaaacctaggttttttaggtatgc |
50677162 |
T |
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| Q |
210 |
gaagattagtaatagggttgttgcttttagtgcgattaacactgatataccaacacccatgattagagaacgagtttaggttatgtacaataatacagaa |
309 |
Q |
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| T |
50677163 |
gaagattagtaatagggttgttgcttttagtgcgattaacactgatataccaacacccatgattagagaacgagtttaggttatgtacaatgatacagaa |
50677262 |
T |
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| Q |
310 |
acttcaacatcaaccatatgaagaagaagaaccagaaatcgagatcggggaaatagtctttgtttgt |
376 |
Q |
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| T |
50677263 |
actgcaacatcaaccgtaggaagaagaagaaccagaaatcgagatcggggaaatagtctctgtttgt |
50677329 |
T |
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