View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_34 (Length: 364)
Name: NF11446_low_34
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 125 - 280
Target Start/End: Original strand, 39994915 - 39995068
Alignment:
| Q |
125 |
attgcagataagaaggaggaggtggaagaatcatattgaaggatgagttgttggaatatagatgaagcaaaaatatgcatcctaagattaacaaaggttc |
224 |
Q |
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| T |
39994915 |
attgcagataagaaggaggaggtagatgaatcatattgaaggatgagttgttggaatatagatgaagc-aaaatatgcatcctaagattaac-aaggttc |
39995012 |
T |
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| Q |
225 |
ataatattacaagaggaaaaacaagattgcaatacatgattaagaaattaatattg |
280 |
Q |
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| T |
39995013 |
ataatattacaagaggaaaaacaagattgcattacatgattaagaaattaatattg |
39995068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 39995491 - 39995558
Alignment:
| Q |
276 |
tattggtttcttcataccaacctcgatatagtaaattattcccatatccatattttgtataagttccata |
345 |
Q |
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| T |
39995491 |
tattggtttcttcataccaacctcaatagagtaaattattccc--atccttattttgtataagttccata |
39995558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 40009164 - 40009225
Alignment:
| Q |
175 |
ttggaatatagatgaagcaaaaatatgcatcctaagattaacaaaggttcataatattacaag |
237 |
Q |
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| T |
40009164 |
ttggaatatagatgaagcaaaagtatgcatcctaagattaac-aaggtccataatattacaag |
40009225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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