View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_38 (Length: 345)
Name: NF11446_low_38
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 153 - 338
Target Start/End: Complemental strand, 25420663 - 25420481
Alignment:
| Q |
153 |
cgaatttaatccgagaaaattgacataattcaacgtaatcacatgtgtcggtaatcacatgtgtcagtatcatgtcggacacgtctttgatccaaagtgt |
252 |
Q |
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| T |
25420663 |
cgaatataatccgagaaaattgacataattcaacgtaatcagatgtgtcagtat---catgtcggagtatcatgtcggacacgtcttcgatcaaaagtgt |
25420567 |
T |
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| Q |
253 |
cggtgcttcaaagattacaaccaatagtttaagatacacaccgatccgcgaagagatttttggtaatcactattctgtctctgctc |
338 |
Q |
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| T |
25420566 |
tggtgcttcaaagattacaaccaatagtttaagatacacaccgatccgcgaagagatttttggtaatcactattctgtttctgctc |
25420481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 25420798 - 25420711
Alignment:
| Q |
18 |
attataactacaattcaaatccggtctcataaaattgacataaacataaaatactcaatgaaaaagaactacattgcaacctatgaag |
105 |
Q |
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| T |
25420798 |
attataactacaattcaaatccggtctcataaaattgacataaacatgaaatactcaatgaaaaagaactacattgcaacctatgaag |
25420711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 10158008 - 10158040
Alignment:
| Q |
173 |
tgacataattcaacgtaatcacatgtgtcggta |
205 |
Q |
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| T |
10158008 |
tgacataattcaatgtaatcacatgtgtcggta |
10158040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 22597022 - 22596987
Alignment:
| Q |
165 |
gagaaaattgacataattcaacgtaatcacatgtgtc |
201 |
Q |
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| T |
22597022 |
gagaaaattg-cataattcaacgtaatcacatgtgtc |
22596987 |
T |
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