View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_39 (Length: 344)
Name: NF11446_low_39
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 45552867 - 45552544
Alignment:
| Q |
1 |
attagaaaggaagttcaggcatcctctattgtagaaaaaatgatagagtctcatctcagatggtttgtagctcgtagatgcatgagtgaggattcagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45552867 |
attagaaaggaagttcaggcatcctctattgtagaaaaaatgatag--tctcatctcagatggtttgtagctcgtagatgcatgagtgaggattcagctt |
45552770 |
T |
|
| Q |
101 |
ctcttcttaagttattttcttaatcattttaatctgtttgtaaaattgataatacatgttttaggattcagcttttcttcttaagttattattttaacgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45552769 |
ctcttcttaagttattttcttaatcattttaatctgtttgtaaaattgataatacatgttttaggattcagtttttcttcttaagttattattttaacgt |
45552670 |
T |
|
| Q |
201 |
atgaacagttgtttcaaatagtcagcattaatctaagtttttatctagttaatttatgaaaaaatgcagaaaggttggtgtctactaagttaggagtctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45552669 |
atgaacagttgtttcaaatagtcagcattaatctaagtttttatctagttaatttatgaaaaaatgcagaaaggttggtgtctactaagttaggagtctt |
45552570 |
T |
|
| Q |
301 |
gaaaagtaacattttctaacagcaac |
326 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
45552569 |
gaaaagtaacattttctaactgcaac |
45552544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 45547504 - 45547455
Alignment:
| Q |
121 |
taatcattttaatctgtttgtaaaattgataatacatgttttaggattca |
170 |
Q |
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||||||| ||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
45547504 |
taatcatcttaatttgtttgtaaaattgataatgcatgttttaggattca |
45547455 |
T |
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