View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_4 (Length: 629)
Name: NF11446_low_4
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 228 - 418
Target Start/End: Original strand, 47198753 - 47198946
Alignment:
| Q |
228 |
attccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttaca |
327 |
Q |
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| T |
47198753 |
attccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttaca |
47198852 |
T |
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| Q |
328 |
ttgaaataagtgagtt---agaagtattactttgcaatc-tttaaattagaaaaggatctttagtggattataatagatccttgccatttagctt |
418 |
Q |
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| T |
47198853 |
ttgaaataagtgagttagaagaagtattac-ttgcaatcttttaaattagaaaaggatctttagtagattataatagatccttgccatttagctt |
47198946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 448 - 629
Target Start/End: Original strand, 47198939 - 47199120
Alignment:
| Q |
448 |
tttagtttaagcatttatcttttacgctcataattattttcattacattcagtgattgtacttcttcaattattataaatgaaatatttcatttggaatt |
547 |
Q |
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| T |
47198939 |
tttagcttaaccatttatcttttacgctcataattattttcattacattcagttattgtacttcttccattattataaatgaaatatttcatttggaatt |
47199038 |
T |
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| Q |
548 |
cttcatttgagatccacttttgtaacttttaggagaggtattttcattgagctacaaaaacttcttgaatctgtgctcctcc |
629 |
Q |
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| T |
47199039 |
cttcatttgagatccacttttgtaacttttaggagaggtattttcattgagctacaaaaacttcttgaatcagtgttcctcc |
47199120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 47198545 - 47198696
Alignment:
| Q |
20 |
atggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgttcact |
119 |
Q |
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| T |
47198545 |
atggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgttcact |
47198644 |
T |
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| Q |
120 |
tttcttattgctcaagctttcttgtccctgttgtgcttatttaagtttggga |
171 |
Q |
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| T |
47198645 |
tttcttattgctcaagctttcttgtccctgttgtgcttatttaagtttggga |
47198696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 47186006 - 47186141
Alignment:
| Q |
20 |
atggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgttcact |
119 |
Q |
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| T |
47186006 |
atggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgttcact |
47186105 |
T |
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| Q |
120 |
tttcttattgctcaagctttcttgtccctgttgtgc |
155 |
Q |
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| T |
47186106 |
tttcttattgctcaagctttcttgtccatgttgtgc |
47186141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 228 - 323
Target Start/End: Original strand, 47186214 - 47186309
Alignment:
| Q |
228 |
attccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagt |
323 |
Q |
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| T |
47186214 |
attccagagacaaagaatatacccattgaagatatggctgagaaagtatggaaacaacattggttctggaagaggtttatgcattgaatttaaagt |
47186309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 748443 - 748369
Alignment:
| Q |
234 |
gagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatg |
308 |
Q |
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| T |
748443 |
gagaccaagaacataccaattgaagaaatgaccgagagagtatggaaacaacattggttctggaagaggtttatg |
748369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 748656 - 748538
Alignment:
| Q |
21 |
tggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgttcactt |
120 |
Q |
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| T |
748656 |
tggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgttcacct |
748557 |
T |
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| Q |
121 |
ttcttattgctcaagcttt |
139 |
Q |
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| T |
748556 |
ttgtcattgctcaggcttt |
748538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 1356829 - 1356896
Alignment:
| Q |
21 |
tggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaag |
88 |
Q |
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| T |
1356829 |
tggggtccactaggttggttagtaccaagtgagatttttccattggagattagatcagctggacaaag |
1356896 |
T |
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