View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11446_low_42 (Length: 324)

Name: NF11446_low_42
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11446_low_42
NF11446_low_42
[»] chr3 (3 HSPs)
chr3 (1-320)||(30071316-30071637)
chr3 (1-142)||(30052667-30052808)
chr3 (1-210)||(30076750-30076958)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 30071316 - 30071637
Alignment:
Q  1 aagttgtacttctcgagttggagaagaaagaatcatgttcatttactttgaaacatccaataggaagtgaatttcatgccagataaataaaggtagcatg 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30071316 aagttgtacttctcgagtaggagaagaaagaatcatgttcatttactttgaaacatccaataggaagtgaatttcatgccagataaataaaggtagcatg 30071415  T
Q  101 gatttaaaccttattttataatatcatggtattcttctgaaaaactgggtggttttggaaagtatctttccaaatttgatagaggtttcttaacatttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30071416 gatttaaaccttattttataatatcatggtattcttctgaaaaactgggtggttttggaaagtatctttccaaatttgatagaggtttcttaacacttgg 30071515  T
Q  201 accaatccattgtacacgcagcacaaatgcatgcaggaatttc--tctctcttctctgacctgcttctactttcttccctatcattccatcaccgccacc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30071516 accaatccattgtacacgcagcacaaatgcatgcaggaatttctttctctcttctctgacccgcttctactttcttccctatcattccatcaccgccacc 30071615  T
Q  299 tcccccctctccatggtctgtg 320  Q
    ||||||||||||||||||||||    
T  30071616 tcccccctctccatggtctgtg 30071637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 30052667 - 30052808
Alignment:
Q  1 aagttgtacttctcgagttggagaagaaagaatcatgttcatttactttgaaacatccaataggaagtgaatttcatgccagataaataaaggtagcatg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || | |||||| |||||||||||    
T  30052667 aagttgtacttctcaagttggagaagaaagaatcatgttcatttaatttgaaacatcctataggaagtgaatttcaggctacataaatgaaggtagcatg 30052766  T
Q  101 gatttaaaccttattttataatatcatggtattcttctgaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30052767 gatttaaaccttattttataatatcatggtattcttctgaaa 30052808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 30076750 - 30076958
Alignment:
Q  1 aagttgtacttctcgagttggagaagaaagaatcatgttcatttactttgaaacatccaataggaagtgaatttcatgccagataaataaaggtagcatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||  |||| | |||||||||| |||  ||    
T  30076750 aagttgtacttctcgagttggagaagaaagaatcatgttcattttctttgaaagattcaataggaagtgaattcaatgctacataaataaagatagtttg 30076849  T
Q  101 gatttaaaccttattttataatatcatggtattcttctgaaaaactgggtggttttggaaagtatctttccaaatttgatagaggtttcttaacatttgg 200  Q
    ||||| |||||||||| |||| |||||| | ||||||||||||| |||||| ||||||||| | | |||| |||||||||||| ||| |||| || | |     
T  30076850 gattttaaccttatttaataaaatcatgatgttcttctgaaaaa-tgggtgattttggaaactgtatttctaaatttgatagaagttccttaccactaga 30076948  T
Q  201 accaatccat 210  Q
    ||||||||||    
T  30076949 accaatccat 30076958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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