View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_44 (Length: 313)
Name: NF11446_low_44
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 31849086 - 31849250
Alignment:
| Q |
25 |
ccacaatctatttcaatcttctgaaagtcaagatagccaatgactcagcataggaatagaatcac--taagcaaataaagatggtttcttgtcttcaaga |
122 |
Q |
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| T |
31849086 |
ccacaatctatttcaatcttctgaaagtcaagatagccaatgactaagcataggaatagaatcacactaagcaaataaagatggtttcttgtcttcaaga |
31849185 |
T |
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| Q |
123 |
tgtatgtatctttacaaggcattaataaaattcagctttggtaatgtgtcgtcctgcaaaattca |
187 |
Q |
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| T |
31849186 |
tgtatgtatctttacaaggcattaataaaattcagctttggtaatgtgtcgtcctgaataattca |
31849250 |
T |
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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 31849250 - 31849337
Alignment:
| Q |
218 |
atgatattcacccaaagaaaaagtttatatgtatttttattgaaaaacatgaagctacaaaataatgtcagtctataatccctatgct |
305 |
Q |
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| T |
31849250 |
atgatattcacccaatgaaaaagtttatatgtatttttattgaaaaacatgaagctacaaaataatgtcagtctataatcccaatgct |
31849337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 158 - 296
Target Start/End: Original strand, 11469191 - 11469329
Alignment:
| Q |
158 |
ctttggtaatgtgtcgtcctgcaaaattcagcttgattgaataattcatgttatcataaaatgatattcacccaaagaaaaagtttatatgtatttttat |
257 |
Q |
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||||||||||| ||| |||||||||||||||||||||| ||||| || |||||||| ||||||||||| ||||||||||||||| | | |||||||||| |
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| T |
11469191 |
ctttggtaatgcgtcctcctgcaaaattcagcttgatttaataactcgtgttatcaaaaaatgatattgacccaaagaaaaagtgtgtttgtatttttac |
11469290 |
T |
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| Q |
258 |
tgaaaaacatgaagctacaaaataatgtcagtctataat |
296 |
Q |
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| T |
11469291 |
tgaaaaaaatcaagttacagaattatgtctgcctataat |
11469329 |
T |
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