View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_49 (Length: 307)
Name: NF11446_low_49
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 8402422 - 8402696
Alignment:
| Q |
14 |
cagaacctgtgccttccctaatcaaatgaactaaaactgctaccaaatttgccattcaattgaatcacaaagatagacatacgagtgtatatatataggt |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8402422 |
cagaccctgtgccttccctaatcaaatgaactaaaactgctacctaatttgccattcaattgaatcacaaagatagacatacgagtgtatatatataggt |
8402521 |
T |
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| Q |
114 |
aaaattgaatgccctatactagctaaacacaatactttcataatgaatctttaaagctttaaatttaggcatgtccaaatttccatttctcacccacttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8402522 |
aaaattgaatgccctatactagctaaacacaatactttcataatgaatctttaaagctttaaatttaggcatgtccaaatttccattt-tcacccacttc |
8402620 |
T |
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| Q |
214 |
acacacaccatagggtcactcctactcaacccaattaagcaagcaggcttgtgagcaattactggcattgctaaac |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8402621 |
acacacaccatagggtcactcctactcaacccaattaagcaagcaggcttgtgagcaattactggcattgctaaac |
8402696 |
T |
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