View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_50 (Length: 305)
Name: NF11446_low_50
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 302711 - 302444
Alignment:
| Q |
7 |
ggagcacagacacaactgtctctgttacaagcaaggtatacatcctacgttactacatcatctaatatagacagtgtacctatttgaagacacaagtgtg |
106 |
Q |
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| T |
302711 |
ggagcaaagacacaacagtctctgttacaagcaaggtatacatactacgttactacatcatctaatatagacagtgtacctatttgaagacacaagtgtg |
302612 |
T |
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| Q |
107 |
actactaaccagcagttaggaaagttaggtatagaatccaatatcataaatccaatattcccatacacagcagcatgattatttaatacccattctctat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| || |
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| T |
302611 |
actactaaccagcagttaggaaagttaggtatagaatcca--------------atattcccat--acagcagcatgattatttaatacccatgctccat |
302528 |
T |
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| Q |
207 |
ataccaattgaataggggaattgtagaacagaacaaggctaggccaaaatgtgtcgatcattgcatactgtaagcctcctcttt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
302527 |
ataccaattgaataggggaattgtagaacagaacaaggctaggccaaaatgtgtcgatcattgcatactgtaagcctcctcttt |
302444 |
T |
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