View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_58 (Length: 257)
Name: NF11446_low_58
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 6939450 - 6939681
Alignment:
| Q |
21 |
tcaggcagatcaaacaaagatttcattcctgtgaacaattctccacataattcctttgagatttcatcacattttaagaggaagcaacctcgactctcaa |
120 |
Q |
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| T |
6939450 |
tcaggcagatcaaacaaagatttcattcctgtgaacaattgtccacataattcctttgagatttcatcacattttaagaggaagcaacctcgactctcaa |
6939549 |
T |
|
| Q |
121 |
atgcttctctcactttcttgctcatttctttccacccttcactcccttcttctaatgtcactccactactcctacggaaatccaaaattgggatctcact |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939550 |
atgcttctctcactttcttgctcatttctttccacccttcactccctttttctaatgtcactccactactcctacggaaatccaaaattgggatctcact |
6939649 |
T |
|
| Q |
221 |
ttcactctccatttttctcccttcttctctct |
252 |
Q |
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|||| ||||||||||||||||||||| ||||| |
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| T |
6939650 |
ttcattctccatttttctcccttcttttctct |
6939681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 6932053 - 6932196
Alignment:
| Q |
27 |
agatcaaacaaagatttcattcctgtgaacaattctccacataattcctttgagatttcatcacattttaagaggaagcaacctcgactctcaaatgctt |
126 |
Q |
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||||||||||| |||||||| ||||||||||||||| ||| | ||| || |||||||||||| ||| || ||| ||||| || |||||||||||| |
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| T |
6932053 |
agatcaaacaatgatttcatgcctgtgaacaattcttcacgtgattgattcaagatttcatcaccccttacgatgaaacaaccatgattctcaaatgctt |
6932152 |
T |
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| Q |
127 |
ctctcactttcttgctcatttctttccacccttcactcccttct |
170 |
Q |
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| T |
6932153 |
ctctcactttcttgcacatttctttccatccttcactctcttct |
6932196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 49831886 - 49831688
Alignment:
| Q |
20 |
ctcaggcagatcaaacaaagatttcattcctgtgaacaattctccacataattcctttgagatttcatcacattttaagaggaagcaacctcgactctca |
119 |
Q |
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|||||| ||||||||||| |||||||| || ||||||| || | ||| |||||| |||| ||||||||||| ||||||| ||||||||| |||||||| |
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| T |
49831886 |
ctcaggtagatcaaacaatgatttcataccagtgaacattttttcacgtaattcatttggtatttcatcacactttaagaagaagcaaccatgactctca |
49831787 |
T |
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| Q |
120 |
aatgcttctctcactttcttgctcatttctttccacccttcactcccttcttctaatgtcactccactactcctacggaaatccaaaattgggatctca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
49831786 |
aatgcttctctcactttcttgctcatttctttccacccttcactgccttcttctaatgtcactccactacttttacgaaaatccaaaattgggatctca |
49831688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 2096357 - 2096427
Alignment:
| Q |
101 |
gaagcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttctt |
171 |
Q |
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||||||||| |||||||| |||||||||||||||| |||||||||| ||||||| | ||||||||||||| |
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| T |
2096357 |
gaagcaaccatgactctcacatgcttctctcacttttttgctcatttttttccactcctcactcccttctt |
2096427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 12458958 - 12458883
Alignment:
| Q |
94 |
ttaagaggaagcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttc |
169 |
Q |
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|||||| ||||||||| |||||||| |||||||||||||||| |||||||| | ||||||| | ||||||||||| |
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| T |
12458958 |
ttaagaagaagcaaccatgactctcacatgcttctctcacttttttgctcatctttttccactcctcactcccttc |
12458883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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