View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11446_low_6 (Length: 576)

Name: NF11446_low_6
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11446_low_6
NF11446_low_6
[»] chr8 (5 HSPs)
chr8 (261-569)||(12568224-12568525)
chr8 (30-105)||(12568106-12568181)
chr8 (30-105)||(38545600-38545675)
chr8 (30-90)||(30773569-30773633)
chr8 (134-178)||(38545716-38545760)
[»] chr2 (2 HSPs)
chr2 (34-238)||(38120777-38120992)
chr2 (30-232)||(40934688-40934904)
[»] chr3 (4 HSPs)
chr3 (30-244)||(1539547-1539772)
chr3 (30-178)||(2455813-2455973)
chr3 (115-249)||(50761041-50761177)
chr3 (29-72)||(50763239-50763282)
[»] chr5 (6 HSPs)
chr5 (30-104)||(34732304-34732378)
chr5 (30-178)||(32487126-32487286)
chr5 (138-249)||(36388543-36388654)
chr5 (30-178)||(2866799-2866961)
chr5 (146-236)||(34732433-34732525)
chr5 (261-293)||(34732604-34732636)
[»] chr4 (3 HSPs)
chr4 (30-105)||(22228423-22228498)
chr4 (30-232)||(55406508-55406722)
chr4 (27-84)||(3463793-3463850)
[»] scaffold0343 (2 HSPs)
scaffold0343 (30-105)||(8246-8321)
scaffold0343 (134-178)||(8361-8405)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 261 - 569
Target Start/End: Original strand, 12568224 - 12568525
Alignment:
Q  261 cacctgcaggtctccactaagatccgccactgcaagcatatgaacttttaagatccaatatctgttaggtatttctattgaggaannnnnnnnnnnnagg 360  Q
    ||||||||||||| || ||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||             |      
T  12568224 cacctgcaggtcttcattaaaatccgtcactgcaaacatatgaacttttaagattcaatatctgttaggtatttttattgaggagaattttttttaaaa- 12568322  T
Q  361 gttttacaagactcagagtttcactcttaagcccatcaatcttaagcaacctaaaatgactgtctcattgtgaatgctcttagtatactacctccacaat 460  Q
     ||||| ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12568323 -ttttataagactcagagtttcact--taagcccatcaatcttaagtaacctaaaatgactgtctcattgcgaatgctcttagtatactacctccacaat 12568419  T
Q  461 cttccaaaattcacccgcatggagcaccccatatatctatgttattattagttatatggcttgatatcattgagatctccacctagaagctacctccctc 560  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12568420 cttccaaaattcacccgcatggagcaccccatatatctatg---ttattagttatatggcttgatatcattgagatctccacctagaagctacctccctc 12568516  T
Q  561 cttcttctc 569  Q
    |||||||||    
T  12568517 cttcttctc 12568525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 12568106 - 12568181
Alignment:
Q  30 caaatatttttagaatatatataaatctgttttaagatattaacgaaattatgaattagtcaagtggtttattttc 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||| ||||||||||    
T  12568106 caaatatttttagaatatatataaatccgttttaagatattaacgaaattatgaattagcttagtagtttattttc 12568181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 38545600 - 38545675
Alignment:
Q  30 caaatatttttagaatatatataaatctgttttaagatattaacgaaattatgaattagtcaagtggtttattttc 105  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||| ||||| |||||||||   ||||||||||||||    
T  38545600 caaatatttttagaatatatatatatcagttttaaaatattaatgaaataatgaattagcgtagtggtttattttc 38545675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 30773633 - 30773569
Alignment:
Q  30 caaatatttttagaatatatataaatctgttttaa----gatattaacgaaattatgaattagtc 90  Q
    |||||||||||||||||||||||||||||||||||    ||||| ||| ||||||||||||||||    
T  30773633 caaatatttttagaatatatataaatctgttttaagattgatataaacaaaattatgaattagtc 30773569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 38545716 - 38545760
Alignment:
Q  134 gacatctttttatgagtaaagtattaataatacaatggaaaatat 178  Q
    ||| ||||||| | |||||||||||||||||||||| ||||||||    
T  38545716 gacctcttttttttagtaaagtattaataatacaattgaaaatat 38545760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 38120992 - 38120777
Alignment:
Q  34 tatttttagaatatatataaatctgttttaagatattaacgaaattatgaattagtcaagtggtttattttcttggta------------acggtggttc 121  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||| |            ||||||||||    
T  38120992 tatttttaaaatatatataaatctgttttaagatattaacaaaattatgaattagcctagtggtttattttcctggaactaccatagagaacggtggttc 38120893  T
Q  122 aattttcattgagacatctttttatgagtaaagtattaataatacaatggaaaatatnnnnnnngaagctaatgaggatcaaacccacgcccttggaggg 221  Q
    || |  ||||| ||| ||||| | | |||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||||| |||    
T  38120892 aaatcccattgggacctctttgttttagtaaagtattaataatacaatggaaaatataaaaaaagaagctaacgaggatcaaacccacgcccttgg-ggg 38120794  T
Q  222 tttcaaaactcgtcaat 238  Q
     ||||||||||||||||    
T  38120793 gttcaaaactcgtcaat 38120777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 40934688 - 40934904
Alignment:
Q  30 caaatatttttagaatatatataaatct--gttttaagatattaacgaaattatgaattagtcaagtggtttattttc------------ttggtaacgg 115  Q
    ||||||||||||||||||||||| || |  ||||||| ||||||| ||||| ||||||||| | ||||||||||||||            | || |||||    
T  40934688 caaatatttttagaatatatatatatatcagttttaaaatattaatgaaataatgaattagcctagtggtttattttcctagaacaactatagggaacgg 40934787  T
Q  116 tggttcaattttcattgagacatctttttatgagtaaagtattaataatacaatggaaaatatnnnnnnngaagctaatgaggatcaaacccacgccctt 215  Q
    |||||| |||  || | |||| ||||||| |||||||||||||||||||||||| ||||||||         |||||| |||||||||||||||||   |    
T  40934788 tggttcgattcccagtaagacctctttttttgagtaaagtattaataatacaattgaaaatataaaaaaaacagctaacgaggatcaaacccacgcagct 40934887  T
Q  216 ggagggtttcaaaactc 232  Q
    || ||||||| ||||||    
T  40934888 ggggggtttcgaaactc 40934904  T

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Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 1539772 - 1539547
Alignment:
Q  30 caaatatttttagaatatatataaatctgttttaagatattaacgaaattatgaattagtcaagtggtttattttcttggta-----------acggtgg 118  Q
    ||||||| ||||||||||||||||||| |||||||| |||| || |||||||||||||| | |||||||||||||| ||  |           |  ||||    
T  1539772 caaatatgtttagaatatatataaatccgttttaagttattgacaaaattatgaattagcctagtggtttattttcctgaaactaccatagagaatgtgg 1539673  T
Q  119 ttcaattttcattgagacatctttttatgagtaaagtattaataatacaatggaaaatatnnnnnnngaagctaatgaggatcaaacccacgcccttgga 218  Q
    |||||||  |||||  || ||||||| ||||||||||||||||||||||||||| |||||       |||||||| |||||||||||  ||||||||||     
T  1539672 ttcaattcccattggaacctctttttttgagtaaagtattaataatacaatggataatataaaaaaagaagctaacgaggatcaaacatacgcccttggg 1539573  T
Q  219 gggtttcaaaactcgtcaatcaactg 244  Q
    ||||||| ||||||||||||| ||||    
T  1539572 gggtttccaaactcgtcaatccactg 1539547  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 2455973 - 2455813
Alignment:
Q  30 caaatatttttagaatatatataaatctgttttaagatattaacgaaattatgaattagtcaagtggtttattttc------------ttggtaacggtg 117  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||| ||||| ||||||||| | ||||||||||||||            | || |||||||    
T  2455973 caaatatttttagaatatatatatatcagttttaaaatattaatgaaataatgaattagcctagtggtttattttcctggaacaactatagggaacggtg 2455874  T
Q  118 gttcaattttcattgagacatctttttatgagtaaagtattaataatacaatggaaaatat 178  Q
    ||||||||  ||||  ||| ||||||| |||||||||||||||||||||||| ||||||||    
T  2455873 gttcaattcccattaggacctctttttttgagtaaagtattaataatacaattgaaaatat 2455813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 50761177 - 50761041
Alignment:
Q  115 gtggttcaattttcattgagacatctttttatgagtaaagtattaataatacaatggaaaatat--nnnnnnngaagctaatgaggatcaaacccacgcc 212  Q
    |||||||||||  ||||| ||| ||||||| |||||||||||||||||||||||||||||||||          ||||||| |||| ||||||| || ||    
T  50761177 gtggttcaattcccattgggacctctttttttgagtaaagtattaataatacaatggaaaatataaaaaaaaataagctaacgaggttcaaaccaacacc 50761078  T
Q  213 cttggagggtttcaaaactcgtcaatcaactgtgaca 249  Q
    ||||| ||||||| ||||||||| ||| |||| ||||    
T  50761077 cttggggggtttccaaactcgtctatccactgcgaca 50761041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 50763282 - 50763239
Alignment:
Q  29 tcaaatatttttagaatatatataaatctgttttaagatattaa 72  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||    
T  50763282 tcaaatatgtttagaatatatataaatccgttttaagttattaa 50763239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 34732304 - 34732378
Alignment:
Q  30 caaatatttttagaatatatataaatctgttttaagatattaacgaaattatgaattagtcaagtggtttatttt 104  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| | |||||||||||||    
T  34732304 caaatgtttttagaatatatataaatccgttttaagatattaacaaaattatgaattagcctagtggtttatttt 34732378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 32487286 - 32487126
Alignment:
Q  30 caaatatttttagaatatatataaatctgttttaagatattaacgaaattatgaattagtcaagtggtttattttc------------ttggtaacggtg 117  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||| ||||| ||||||||| | ||||||||||||||            | || |||||||    
T  32487286 caaatatttttagaatatatatatatcagttttaaaatattaatgaaataatgaattagcctagtggtttattttcctggaacaactatagggaacggtg 32487187  T
Q  118 gttcaattttcattgagacatctttttatgagtaaagtattaataatacaatggaaaatat 178  Q
    |||| |||  ||||  ||| ||||||| |||||||||||||||||||||||| ||||||||    
T  32487186 gttcgattcccattaggacctctttttttgagtaaagtattaataatacaattgaaaatat 32487126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 36388543 - 36388654
Alignment:
Q  138 tctttttatgagtaaagtattaataatacaatggaaaatatnnnnnnngaagctaatgaggatcaaacccacgcccttggagggtttcaaaactcgtcaa 237  Q
    ||||||| |||||||||||||||||||||||||||||||||       |||||||| ||||||| ||||||  ||||| | ||||||||||| || ||||    
T  36388543 tctttttttgagtaaagtattaataatacaatggaaaatataaaaaaggaagctaacgaggatcgaacccaaacccttagggggtttcaaaattcatcaa 36388642  T
Q  238 tcaactgtgaca 249  Q
    || |||| ||||    
T  36388643 tccactgcgaca 36388654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 2866799 - 2866961
Alignment:
Q  30 caaatatttttagaatatatataaatct--gttttaagatattaacgaaattatgaattagtcaagtggtttattttcttg------------gtaacgg 115  Q
    ||||||||||||||||||||||| || |  ||||||| ||||||  ||||| ||||||||| | |||||||||||||| ||            | |||||    
T  2866799 caaatatttttagaatatatatatatatcagttttaaaatattagtgaaataatgaattagcctagtggtttattttcctgaaacaactatagggaacgg 2866898  T
Q  116 tggttcaattttcattgagacatctttttatgagtaaagtattaataatacaatggaaaatat 178  Q
    |||||| |||  ||||  ||| ||||||| |||||||||||||||||||||||| ||||||||    
T  2866899 tggttcgattcccattaggacctctttttttgagtaaagtattaataatacaattgaaaatat 2866961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 34732433 - 34732525
Alignment:
Q  146 tgagtaaagtattaataatacaatggaaaatatnnnnnnngaagctaatgaggatc--aaacccacgcccttggagggtttcaaaactcgtca 236  Q
    ||||||||||||||||||||||||||||||| |       |||||||| | |||||   ||||||| ||||||| ||||||| ||||||||||    
T  34732433 tgagtaaagtattaataatacaatggaaaatgtaaaaaaagaagctaacgtggatcgagaacccacacccttggggggtttcgaaactcgtca 34732525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 34732604 - 34732636
Alignment:
Q  261 cacctgcaggtctccactaagatccgccactgc 293  Q
    |||||||||||| ||||||||||||||||||||    
T  34732604 cacctgcaggtcaccactaagatccgccactgc 34732636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 22228498 - 22228423
Alignment:
Q  30 caaatatttttagaatatatataaatctgttttaagatattaacgaaattatgaattagtcaagtggtttattttc 105  Q
    |||||||| |||||||||||||||||| |||||||||||||||  |||||||||||||| | ||||||||||||||    
T  22228498 caaatattattagaatatatataaatccgttttaagatattaataaaattatgaattagcctagtggtttattttc 22228423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 55406508 - 55406722
Alignment:
Q  30 caaatatttttagaatatatataaatctgttttaagatattaacgaaattatgaattagtcaagtggtttattttc------------ttggtaacggtg 117  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||| ||||| ||||||||| | ||||||||||||||            | || |||||||    
T  55406508 caaatatttttagaatatatatatatcagttttaaaatattaatgaaataatgaattagcctagtggtttattttcctggaacaactatagggaacggtg 55406607  T
Q  118 gttcaattttcattgagacatctttttatgagtaaagtattaataatacaatggaaaatatnnnnnnngaagctaatgaggatcaaacccacgcccttgg 217  Q
    |||| |||  ||||  ||| |||| || |||||||||||||||||||||||| ||||||||         |||||| ||||||| |||||||||   |||    
T  55406608 gttcgattcccattaggacctcttcttttgagtaaagtattaataatacaattgaaaatataaaaaaaacagctaacgaggatcgaacccacgcagctgg 55406707  T
Q  218 agggtttcaaaactc 232  Q
     ||||||||||||||    
T  55406708 ggggtttcaaaactc 55406722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 3463850 - 3463793
Alignment:
Q  27 tgtcaaatatttttagaatatatataaatctgttttaagatattaacgaaattatgaa 84  Q
    |||||||||||| | |||||||||| || | |||||||||||||| | ||||||||||    
T  3463850 tgtcaaatatttgtggaatatatattaaacagttttaagatattatcaaaattatgaa 3463793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 8246 - 8321
Alignment:
Q  30 caaatatttttagaatatatataaatctgttttaagatattaacgaaattatgaattagtcaagtggtttattttc 105  Q
    ||||||||||| ||||||||||| ||| ||||||| ||||||| ||||| ||||||||| | ||||||||||||||    
T  8246 caaatattttttgaatatatatatatcagttttaaaatattaatgaaataatgaattagcctagtggtttattttc 8321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 8361 - 8405
Alignment:
Q  134 gacatctttttatgagtaaagtattaataatacaatggaaaatat 178  Q
    ||| ||||||| |||||||||||||||||||||||| ||||||||    
T  8361 gacctctttttttgagtaaagtattaataatacaattgaaaatat 8405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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