View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_70 (Length: 228)
Name: NF11446_low_70
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_70 |
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| [»] scaffold0004 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 883693 - 883893
Alignment:
| Q |
11 |
gagaagcagagatttcctcggaaagcatttggagtttcatctccaaatcgatcaggtgttgagagtgtcgactgttacatgctgtgttgatccatttctt |
110 |
Q |
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| T |
883693 |
gagaagcggagatttcctcggaaagcatttggagtttcatctccaaatcgatcaggtgttgagagtgtcgactgttacatgctgtgttgatccatttctt |
883792 |
T |
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| Q |
111 |
tgggtcgaaatttgagtttgagaatgaaactaaatcaatcatcgtcattgtggaaatcgcttcattcaatctccactttcagaaaatgatgaatgataga |
210 |
Q |
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| T |
883793 |
tgggtcgaaatttgagtttgagaatgaaactaaatcaatcatcgtcattgtgggaatcgcttcattcaatctccactttcagaaaatgatgaatgataga |
883892 |
T |
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| Q |
211 |
t |
211 |
Q |
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| T |
883893 |
t |
883893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 853497 - 853671
Alignment:
| Q |
11 |
gagaagcagagatttcctcggaaagcatttggagtttcatctccaaatcgatcaggtgtt---------------gagagtgtcgactgttacatgctgt |
95 |
Q |
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| T |
853497 |
gagaagcggagatttcttcggaaagcatctggagtttcatctccaaatcgatcaggtgtttgtctaatgactgttgagagtgtcgactgtgacatgctgt |
853596 |
T |
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| Q |
96 |
gttgatccatttctttgggtcgaaatttgagtttgagaatgaaactaaatcaatcatcgtcattgtggaaatcgc |
170 |
Q |
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| T |
853597 |
gttgatccatttctttgggtcgaaatttgagtttgagaattgaaccaaatctaccatcatctttgtgggaatcgc |
853671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 239736 - 239795
Alignment:
| Q |
11 |
gagaagcagagatttcctcggaaagcatttggagtttcatctccaaatcgatcaggtgtt |
70 |
Q |
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| T |
239736 |
gagaagcggcgatttcctcggaaaccatctggagtttcatctctaaatcgaccagatgtt |
239795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 239815 - 239862
Alignment:
| Q |
75 |
gtgtcgactgttacatgctgtgttgatccatttctttgggtcgaaatt |
122 |
Q |
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| T |
239815 |
gtgtcgactctgacacgctgagttgatccatttctttgggtcgaaatt |
239862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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