View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11446_low_71 (Length: 225)
Name: NF11446_low_71
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_71 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 28476583 - 28476774
Alignment:
| Q |
16 |
atgaacctacgtttctcggaacagaaatatctacgaagaggcgttttcctcccatttcttcgcttgctaaaggaagttccttaacattttgtttcaaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28476583 |
atgaacctacgtttctcggaacagaaatatctacgaagaggcgttttcctcccatttcttcgcttgctaaaggaagttccttaacattttgtttaaaaat |
28476682 |
T |
|
| Q |
116 |
caaaggattctctgatgcagtgctagtgaaaacaacatctgcttcaccaatacattcgagcatttccgaaagcggtttgtagattatctcaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28476683 |
caaaggattctctgatgcagtgctagtgaaaacaacatctgcttcaccaatacattcaagcatttccgaaagcggtttgtagattatctcaa |
28476774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University