View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11446_low_72 (Length: 223)

Name: NF11446_low_72
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11446_low_72
NF11446_low_72
[»] chr4 (3 HSPs)
chr4 (7-194)||(43522169-43522355)
chr4 (185-223)||(48336255-48336293)
chr4 (191-223)||(6121993-6122025)
[»] chr8 (2 HSPs)
chr8 (186-223)||(6552648-6552685)
chr8 (191-223)||(39571303-39571335)
[»] chr1 (3 HSPs)
chr1 (187-223)||(47216799-47216835)
chr1 (191-223)||(1050886-1050918)
chr1 (185-221)||(39401958-39401994)
[»] chr7 (2 HSPs)
chr7 (188-223)||(31319499-31319534)
chr7 (187-223)||(38441454-38441490)
[»] scaffold1707 (1 HSPs)
scaffold1707 (193-223)||(1335-1365)
[»] scaffold0204 (1 HSPs)
scaffold0204 (185-223)||(23777-23815)
[»] chr6 (3 HSPs)
chr6 (189-223)||(9644692-9644726)
chr6 (189-223)||(9650709-9650743)
chr6 (190-223)||(26602320-26602353)
[»] chr5 (1 HSPs)
chr5 (189-223)||(9395346-9395380)
[»] chr3 (1 HSPs)
chr3 (185-223)||(22721923-22721961)
[»] chr2 (2 HSPs)
chr2 (191-223)||(6648619-6648651)
chr2 (191-223)||(16044417-16044449)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 43522355 - 43522169
Alignment:
Q  7 tgtattattgcaaccatccatgtattgtagnnnnnnngatccaacggcgataatccattcgccagcaattcgtgaaattgagttcgcttccaaatagcaa 106  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  43522355 tgtattattgcaaccatccatgtattgtagaaaaaaagatccaacggcgataatccattcgccagcaattcatgaaattgagttcgct-ccaaatagcaa 43522257  T
Q  107 aagctctagtaaaaatatcttggaccatgcgtaatgaaacccttaaaaatataaaaaatgctcttgataatatgacctttatatatta 194  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  43522256 aagctctagtaaaaatatcttagaccatacgtaatgaaacccttaaaaatataaaaaatgctcttaataacatgacctttatatatta 43522169  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 48336255 - 48336293
Alignment:
Q  185 ttatatattactacatccggtcctatttataagagaaat 223  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  48336255 ttatataatactacctccggtcctatttataagagaaat 48336293  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 6122025 - 6121993
Alignment:
Q  191 attactacatccggtcctatttataagagaaat 223  Q
    |||||||| ||||||||||||||||||||||||    
T  6122025 attactacctccggtcctatttataagagaaat 6121993  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 6552648 - 6552685
Alignment:
Q  186 tatatattactacatccggtcctatttataagagaaat 223  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  6552648 tatatattactacctccggtcctatttataagagaaat 6552685  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 39571335 - 39571303
Alignment:
Q  191 attactacatccggtcctatttataagagaaat 223  Q
    |||||||| ||||||||||||||||||||||||    
T  39571335 attactacctccggtcctatttataagagaaat 39571303  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 47216835 - 47216799
Alignment:
Q  187 atatattactacatccggtcctatttataagagaaat 223  Q
    |||||||||||| ||||||||||||||||||||||||    
T  47216835 atatattactacctccggtcctatttataagagaaat 47216799  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 1050886 - 1050918
Alignment:
Q  191 attactacatccggtcctatttataagagaaat 223  Q
    |||||||| ||||||||||||||||||||||||    
T  1050886 attactacctccggtcctatttataagagaaat 1050918  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 39401958 - 39401994
Alignment:
Q  185 ttatatattactacatccggtcctatttataagagaa 221  Q
    |||||||||||| | ||||||||||||||||||||||    
T  39401958 ttatatattactccctccggtcctatttataagagaa 39401994  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 31319534 - 31319499
Alignment:
Q  188 tatattactacatccggtcctatttataagagaaat 223  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31319534 tatattactacctccggtcctatttataagagaaat 31319499  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 38441454 - 38441490
Alignment:
Q  187 atatattactacatccggtcctatttataagagaaat 223  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  38441454 atatagtactacctccggtcctatttataagagaaat 38441490  T

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Target: scaffold1707 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1707
Description:

Target: scaffold1707; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 1335 - 1365
Alignment:
Q  193 tactacatccggtcctatttataagagaaat 223  Q
    |||||||||||||||||||||||||||||||    
T  1335 tactacatccggtcctatttataagagaaat 1365  T

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Target: scaffold0204 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 23777 - 23815
Alignment:
Q  185 ttatatattactacatccggtcctatttataagagaaat 223  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  23777 ttatataatactacctccggtcctatttataagagaaat 23815  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 9644692 - 9644726
Alignment:
Q  189 atattactacatccggtcctatttataagagaaat 223  Q
    |||||||||| ||||||||||||||||||||||||    
T  9644692 atattactacctccggtcctatttataagagaaat 9644726  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 9650709 - 9650743
Alignment:
Q  189 atattactacatccggtcctatttataagagaaat 223  Q
    |||||||||| ||||||||||||||||||||||||    
T  9650709 atattactacctccggtcctatttataagagaaat 9650743  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 26602320 - 26602353
Alignment:
Q  190 tattactacatccggtcctatttataagagaaat 223  Q
    ||||||||| ||||||||||||||||||||||||    
T  26602320 tattactacctccggtcctatttataagagaaat 26602353  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 9395346 - 9395380
Alignment:
Q  189 atattactacatccggtcctatttataagagaaat 223  Q
    |||||||||| ||||||||||||||||||||||||    
T  9395346 atattactacctccggtcctatttataagagaaat 9395380  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 22721923 - 22721961
Alignment:
Q  185 ttatatattactacatccggtcctatttataagagaaat 223  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  22721923 ttatataatactacctccggtcctatttataagagaaat 22721961  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 6648651 - 6648619
Alignment:
Q  191 attactacatccggtcctatttataagagaaat 223  Q
    |||||||| ||||||||||||||||||||||||    
T  6648651 attactacctccggtcctatttataagagaaat 6648619  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 16044449 - 16044417
Alignment:
Q  191 attactacatccggtcctatttataagagaaat 223  Q
    |||||||| ||||||||||||||||||||||||    
T  16044449 attactacctccggtcctatttataagagaaat 16044417  T

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