View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11446_low_9 (Length: 531)
Name: NF11446_low_9
Description: NF11446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11446_low_9 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 17923799 - 17923531
Alignment:
| Q |
18 |
acgttgatcatgctaaatctcacctacaacggtgtgttagtatcgtctttttaagttctccaaattcgtattttattttgtttatatgatggnnnnnnn- |
116 |
Q |
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||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||| |
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| T |
17923799 |
acgttcatcatgctaaatctcacctacaaggatgtgttagtatcgtctttttaagttcttcaaattagtattttatttt-tttatatgatggtttttttt |
17923701 |
T |
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| Q |
117 |
---gtagcaattgctcttgaagtcgacacagacttgtttagaattgaagtgtaaagtttatagtttgttaagtcaatgttatcatcttgttggagatatt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17923700 |
tttgtagcaattgctcttgaagtcgacacagacttgtttagaattgaagtgtaaagtttatagtttgttaagtcaatgttatcatcttgttggagatatt |
17923601 |
T |
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| Q |
214 |
aaatatcagaaaaaagttttgtttgagggtcttcaacttgctgcctcttctgctggaaataatgagtata |
283 |
Q |
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| T |
17923600 |
aaatatcagaaaaaaattttgtttgagggtcttcaacttgctgcctcttctgctggaaataatgagtata |
17923531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 321 - 484
Target Start/End: Complemental strand, 17923493 - 17923330
Alignment:
| Q |
321 |
aagatcatggaaactcggcttaggttatttgggagaatagaaggcgagacataggatcaaacatttcaactcgtttaagttattggtttaagtaattggg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
17923493 |
aagatcatggaaactcggcttaggttatttgggagaatagaaggcgtgacataggatcaaacatttcaattcgtttaagttatgggtttaagtaattggg |
17923394 |
T |
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| Q |
421 |
ggatctaggttcaaaccctaatgaaagagaaaaatactaacctaacaactaataactaacgttg |
484 |
Q |
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| T |
17923393 |
ggatctaggttcaaaccctaatgaaagagaaaaatactaccctaacaactaataactaaagttg |
17923330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 416 - 492
Target Start/End: Complemental strand, 17923255 - 17923179
Alignment:
| Q |
416 |
ttgggggatctaggttcaaaccctaatgaaagagaaaaatactaacctaacaactaataactaacgttggatccatt |
492 |
Q |
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| T |
17923255 |
ttggaggatctaggtcgaaaccctagtgaaagagaaaaacactaacctaacaactaataactaacgttggatccatt |
17923179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 117 - 273
Target Start/End: Complemental strand, 32359082 - 32358926
Alignment:
| Q |
117 |
gtagcaattgctcttgaagtcgacacagacttgtttagaattgaagtgtaaagtttatagtttgttaagtcaatgttatcatcttgttggagatattaaa |
216 |
Q |
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|||||||||| | |||||| | | || | ||||||| || ||||| |||| || ||||||||||| ||||| ||||||||||||||||||| |||| || |
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| T |
32359082 |
gtagcaattgttgttgaaggctataccgtcttgttttgagttgaaatgtagagcttatagtttgtcgagtcagtgttatcatcttgttggagctattcaa |
32358983 |
T |
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| Q |
217 |
tatcagaaaaaagttttgtttgagggtcttcaacttgctgcctcttctgctggaaat |
273 |
Q |
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| T |
32358982 |
cctcagaaacaggttttgtttaagggtcttgatcttgctgctgcttctgctggaaat |
32358926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Original strand, 31951915 - 31951959
Alignment:
| Q |
429 |
gttcaaaccctaatgaaagagaaaaatactaacctaacaactaata |
474 |
Q |
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| T |
31951915 |
gttcaaaccctagtgaaagag-aaaatactaacataacaactaata |
31951959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Original strand, 155280 - 155313
Alignment:
| Q |
447 |
gagaaaaatactaacctaacaactaataactaac |
480 |
Q |
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| T |
155280 |
gagaaaaatactaacctaacaactaattactaac |
155313 |
T |
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