View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11447_high_14 (Length: 420)
Name: NF11447_high_14
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 210 - 406
Target Start/End: Complemental strand, 49365286 - 49365091
Alignment:
| Q |
210 |
atttcacattaacttttattacatacatactttcaaatatttaagttttttaaatgaaatagttaaactcaaatggttgataagttaacgttgaatcaat |
309 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49365286 |
atttcacattaacttttattaca-acatactttcaaatatttaagttttttaaatgaaatagttaaactcaaatggttgataagttaacgttgaatcaat |
49365188 |
T |
|
| Q |
310 |
cgacaatatgtgtatttagatccataactgaactaatatgatgtatctttcatcatatcaatagcaagttgctttgaatcatgttaaacatatattt |
406 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49365187 |
cgacaatatgtgtatttagatccgtaactgaactaatatgatgtatctttcatcatatcaatagcaagttgctttgaatcatgttaaacatatattt |
49365091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 49365437 - 49365287
Alignment:
| Q |
18 |
atcttgtcttgttgtttaaattgaatcgtatgaattagctaaaattttcaatttttcaaaattttatggattgcgtgaaatgtaagccttctatcatcca |
117 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49365437 |
atcttatcttgttgtttaaattgaatcgaatgaattagctaaaattttcaatttttcaaaattttatggattgcgtgaaatgtaagccttctatcatcca |
49365338 |
T |
|
| Q |
118 |
tgcattttagatgaattttaattgttatagtttgtcctctgacatttaatt |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49365337 |
tgcattttagatgaattttaattgttatagtttgtcctctgacatttaatt |
49365287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 32524785 - 32524737
Alignment:
| Q |
349 |
gatgtatctttcatcatatcaatagcaagttgctttgaatcatgttaaa |
397 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
32524785 |
gatgtatctttcatcatatcaatagtaagttgctttgaatcatgataaa |
32524737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 33765309 - 33765262
Alignment:
| Q |
351 |
tgtatctttcatcatatcaatagcaagttgc-tttgaatcatgttaaa |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33765309 |
tgtatctttcatcatatcaatagcaagttgcttttgaatcatgttaaa |
33765262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University