View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11447_high_18 (Length: 344)
Name: NF11447_high_18
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 34426288 - 34426003
Alignment:
| Q |
18 |
aatagttgtcctaagggtacggcaccaagacataaacataataattgtgtcctaaatttcattcttatacaaataatgatattgatgggttttaatattt |
117 |
Q |
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| T |
34426288 |
aatagttgtcctaagggtacggcaccaagacataaacataataattgtgtcctaaatttcattcttatacaaataataatattgatgggttttaatattt |
34426189 |
T |
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| Q |
118 |
gcattatcatgtgcaatgcccctttttcaaggcaagtaatatttgccactgctagtgctaccactcacatcacatattagcagtcaatatctctccctaa |
217 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426188 |
gcattatcatgtgcaatgccccttttttcaggtaagtaatatttgccactgctagtgctaccactcacatcacatattagcagtcaatatctctccctaa |
34426089 |
T |
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| Q |
218 |
gcatgcgacaattcaatattagaaatgtaattcagataagacaaaacataagggtgacaacttgccttgtcatgttctgtttattatggacaataataat |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426088 |
gcatgcgacaattcaatattag-aatgtaattcagata----------------tgacaacttgccttgtcatgttctgtttattatggacaataataat |
34426006 |
T |
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