View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11447_high_20 (Length: 282)
Name: NF11447_high_20
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 14128491 - 14128220
Alignment:
| Q |
1 |
ttgcaaagaaaagaaaggtttttgtgtgcaagagaaatggacatggctttgctctcttttattgtgcactttgagaggaacactttgcaattaatttgta |
100 |
Q |
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| T |
14128491 |
ttgcaaagaaaagaaaggtttttgtgtgcaagagaaatggacatggctttgctctcttttattgtgcactttgagaggaacactttgcaattaatttgta |
14128392 |
T |
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| Q |
101 |
tgaaggttccaaccgagtttttctccttaatttatgccatgagcatcttgagggaatctaggccttaagagttttgtatg-----------ataggataa |
189 |
Q |
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| T |
14128391 |
tgaaggttccaaccgagtttttctccttaatttatgccatgagcatcttgagggaatctaggccttaagagttttgtatgatagttctgacataggataa |
14128292 |
T |
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| Q |
190 |
gtagttactattacattgagaattgcatttaacttgatgttcacttttctgtctatgtttaaaagacaagga |
261 |
Q |
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| T |
14128291 |
gtagtttctattacattgtgaattgcatttaacttgatgttcacttttctgtctatttttaaaagacaagga |
14128220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 14124597 - 14124430
Alignment:
| Q |
1 |
ttgcaaagaaaagaaaggtttttgtgtgcaagagaaatggacatggctttgctctcttttattgtgcactttgagaggaacactttgcaattaatttgta |
100 |
Q |
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| T |
14124597 |
ttgctaaggaaagaaagggttttgtttgtatgaaaaatggacagaactttgctcccttttattgtgcacttcgag--gaacactttgcaattaatttgta |
14124500 |
T |
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| Q |
101 |
tgaag--------gttccaaccgagtttttctccttaatttatgccatgagcatcttgagggaatctagg |
162 |
Q |
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| T |
14124499 |
tgaagatttgacttttccaaccgagtttttctccttaatttatgccatgaacatgttaagggaatctagg |
14124430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 14111438 - 14111383
Alignment:
| Q |
115 |
gagtttttctccttaatttatgccatgagcatcttgagggaatctaggccttaaga |
170 |
Q |
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| T |
14111438 |
gagtttttctccttaattcatgccacgagcatggtgaggatatctaggccttaaga |
14111383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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