View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11447_high_27 (Length: 235)
Name: NF11447_high_27
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11861551 - 11861775
Alignment:
| Q |
1 |
attccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaa |
100 |
Q |
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||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
11861551 |
attccaaaacttaagtcccttccatggggagttgaaaatgtgaacactttgaaagacttaaggatttatgattgtcatggtttaacttttttaccagaaa |
11861650 |
T |
|
| Q |
101 |
gtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatac |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11861651 |
gtataggtaacctcacttcacttgaaaaactggttctttctgaatgcagaaagttagattctctgcccaaaggaatggaaaagcttgagtctctaaatac |
11861750 |
T |
|
| Q |
201 |
tttgattattatggattgccctttg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
11861751 |
tttgattattatggattgccctttg |
11861775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11829452 - 11829676
Alignment:
| Q |
1 |
attccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaa |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
11829452 |
attccaaaactgaagtcccttccatggggagttgaaaacgtgaaaactttgaaagacttgaggatttatgattgtcatggtttaacttctttaccagaaa |
11829551 |
T |
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| Q |
101 |
gtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatac |
200 |
Q |
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| T |
11829552 |
gtataggtaacctcacttcacttgaaagactggttctttctgaatgcagaaatttagattctcttcccaaaggaatggaaatgcttcagtctctaaatac |
11829651 |
T |
|
| Q |
201 |
tttgattattatggattgccctttg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
11829652 |
tttgattattatggattgccctttg |
11829676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11900967 - 11900743
Alignment:
| Q |
1 |
attccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaa |
100 |
Q |
| |
|
||||| ||||| |||||||||||| ||| | ||||||| |||| ||||| | || |||||| ||||||||||||||||| ||||| || |||||| |
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| T |
11900967 |
attcccaaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggctttatgattgccatggtctaactgacctaacagaaa |
11900868 |
T |
|
| Q |
101 |
gtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatac |
200 |
Q |
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| T |
11900867 |
gcataggtaacctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctgcccaaggggatggaaatgctacagtctctaaatac |
11900768 |
T |
|
| Q |
201 |
tttgattattatggattgccctttg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
11900767 |
tttgattattatggattgccctttg |
11900743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 12040402 - 12040566
Alignment:
| Q |
57 |
cttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagtta |
156 |
Q |
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||||||| ||||||||||||| |||||||||||| | || ||||| ||| | ||| | ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12040402 |
cttaaggctttatgattgccagggtttaacttctctcccggaaagcatatgcaacttcgcttcacttgaaaaactggttctttcggaatgcagaaagtta |
12040501 |
T |
|
| Q |
157 |
ggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccc |
221 |
Q |
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| T |
12040502 |
gattctctgcccaaaggaatggaaacgctacagtctctaaagactttgattattagggactgccc |
12040566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 11733276 - 11733417
Alignment:
| Q |
36 |
aaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggtt |
135 |
Q |
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|||| ||||| | |||||||| ||||||||||||||||||| | |||||||| ||||||||||| |||| || || ||||||||| |||||||| |
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| T |
11733276 |
aaacttgaaatcattgaaagatttaaggatttatgattgccctagtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggtt |
11733375 |
T |
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| Q |
136 |
ctttctgaatgcagaaagttaggttctctgcccaaaggaatg |
177 |
Q |
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|||||||||||||||| | | ||||||||||||||||||| |
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| T |
11733376 |
ctttctgaatgcagaagtatggattctctgcccaaaggaatg |
11733417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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