View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11447_high_5 (Length: 590)
Name: NF11447_high_5
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 39999515 - 39998942
Alignment:
| Q |
1 |
tagggttttttccataataatgtcattggcccgagggcaggaatgctggtagaagttcttcctcaggatgcctccttgacaagtcacaacgaaacttaaa |
100 |
Q |
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| T |
39999515 |
tagggttttttccataataatgtcattggcctgagggcaggaatgctggtagaagttcttccccaggatgcctccttgacaaatcacaacgaaacttaaa |
39999416 |
T |
|
| Q |
101 |
agaaccatgcaaggcactagtgaaaatctgttcgtattcaaaggggagaatgaatgctgaactagaaggacatcccatccttttatagtatcatatttcc |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39999415 |
agtaccatgcaaggcactagtgaaaatctgttcgtattcaaaggggagaatgaatgctgaactagaaggacatcccatccttttatagtatcatatttcc |
39999316 |
T |
|
| Q |
201 |
atatagtcaaatagcaatggcattacttcatttaaattttatgggaaaggttagtttcaaattatgtcctaaacttttttatcagtaagaatcaaatttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39999315 |
atatagtcaaatagcaatggcattacttcatttaaattttatgggaaagattagtttcaaattatgtcctaaacttttttatcagtaagaatcaaatttg |
39999216 |
T |
|
| Q |
301 |
ctatccgagttttacaacactcatacaccatgtgtaccaattatttgcgctagacctcaatagcatgcatgccctactattttttcataataaaaaagtc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39999215 |
ctatccgagttttacaacactcatacaccatgtgtaccaattatttgcgctagacctcaatagcatgcatgtcctactattttttcataataaaaaagtc |
39999116 |
T |
|
| Q |
401 |
tagggtgaggggcactccagtcctgccctttacaaacataaaattaatttattcttcaaccagctaattcaatgtgcctgaaataaatttaggatgaggg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39999115 |
tagggtgaggggcactccagtcctgccctttacaaacataaaattaatttattcttcaaccagctaattcaatgtgcctgaaataaatttaggatgaggg |
39999016 |
T |
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| Q |
501 |
gaagatgcaccagtataaggtaggaaagacctttgcccttaaagagcacttccaatcttcaaaggtataactga |
574 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39999015 |
gacgatgcaccagtataaggtaggaaagacctttgcccttaaagagcacttccaatcttcaaaggtataactga |
39998942 |
T |
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