View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11447_low_1 (Length: 805)
Name: NF11447_low_1
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 666; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 18 - 746
Target Start/End: Complemental strand, 48877391 - 48876664
Alignment:
| Q |
18 |
aaagtaaggcctcaacactgtctccatttcgtattgcataaagacagttccagttccggtatttctgccaaccgcaaacacactatgatagtctacttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877391 |
aaagtaaggcctcaacactgtctccatttcgtattgcataaagacaattccagttccggtatttctgccaaccgcaaacacactatgatagtctacttgt |
48877292 |
T |
|
| Q |
118 |
tacattgaattcgaaaaccctgagttgcactagagttttacgagcagcctgcaggataaactctaatgcatcagtatactccacttgaattgtccgaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877291 |
tacattgaattcgaaaaccctgagttgcactagagttttacgagcagcctgcaggataaactctaatgcatcagtatactccacttgaattgtccgaatt |
48877192 |
T |
|
| Q |
218 |
tttctgaggtagaagaaataaggactgaactggtttgaataagcttcaaatagtgtagccaaacttctctgcttggtcatgcaggttgtagtgaagatag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48877191 |
tttctgaggtagaagaaataaggactgaactggtttgaataagcttcaaatagtggagccaaacttctctgcttggtcatacaggttgtagtgaagatag |
48877092 |
T |
|
| Q |
318 |
ttgcaaagtaacaaattaagaagggtttactgacagaactcggcatggagcaggcactgtggcaatccggtgcattgcaaagaggttgctctgaacttca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877091 |
ttgcaaagtaacaaattaagaagggtttactgacagaactcgtcatggagcaggcactgtggcaatccggtgcattgcaaagaggttgctctgaacttca |
48876992 |
T |
|
| Q |
418 |
gcgagatggccagtaagttcatggctatacgaatagannnnnnnnngtccagatgcagtaacatcaacagttcttctgttcacgttcttcagccaagcaa |
517 |
Q |
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| T |
48876991 |
gcgagatcgccagtaagttcatggctatacgaatagatttttttttgtccagatgcagtaacatcaacagttcttctgttcacgttcttcagccaagcaa |
48876892 |
T |
|
| Q |
518 |
aactagccgagggacaagctttggccccatttggtaaaatcatatctactggcatttcttaataattttgcaacgagaaaaatgaatgcttgtgatacac |
617 |
Q |
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| T |
48876891 |
aactagccgagggacaagctttggccccatttggt-aaatcatatctactggcatttcttaataattttgcaatgagaaaaatgaatgcttgtgatacac |
48876793 |
T |
|
| Q |
618 |
tcattgccaagtagtttatagttcttacatttttgttcaataattatcaaagtattttcgaagtaccaactttatgttcttattattcgagctaagatct |
717 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48876792 |
tcattgccaagtagtttatagttcttacatttttgttcaataattatcaaagtattttcgaagtaccaactttatgttcttattattcgagctaagatca |
48876693 |
T |
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| Q |
718 |
ctagtgactagccctatagaaaaaggggt |
746 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
48876692 |
ctagtgactagccctatagaaaaaggggt |
48876664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 745 - 801
Target Start/End: Complemental strand, 48876609 - 48876553
Alignment:
| Q |
745 |
gtaacagaaatcaaaatgactgcacatttcaacaacatcatagtacctatgcttctc |
801 |
Q |
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| T |
48876609 |
gtaacagaaatcaaaatgactgcacatttcaacaacatcatagtacctatgcttctc |
48876553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 8380634 - 8380756
Alignment:
| Q |
112 |
acttgttacattgaattcgaaaaccctgagttgca-ctagagttttacgagcagcctgcaggataaactctaatgcatcagtatactccacttgaattgt |
210 |
Q |
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|||||||||| ||||| ||||| ||||| | |||| || | | |||||||||||||||||||| | ||||| |||||| |||||||||| ||||| || |
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| T |
8380634 |
acttgttacactgaatccgaaacccctgtgctgcaactggtgctttacgagcagcctgcaggagagactcttttgcatcggtatactccaactgaatggt |
8380733 |
T |
|
| Q |
211 |
ccgaatttttctgaggtagaaga |
233 |
Q |
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||||||||| | ||||||||||| |
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| T |
8380734 |
ccgaattttcccgaggtagaaga |
8380756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 543
Target Start/End: Original strand, 8381353 - 8381420
Alignment:
| Q |
476 |
taacatcaacagttcttctgttcacgttcttcagccaagcaaaactagccgagggacaagctttggcc |
543 |
Q |
| |
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||||||||||||||||||| |||| |||||| |||| | ||| ||||| |||| ||||||||||||| |
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| T |
8381353 |
taacatcaacagttcttctattcaagttcttgagccgatcaatgctagctgaggaacaagctttggcc |
8381420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 8380942 - 8381008
Alignment:
| Q |
279 |
aacttctctgcttggtcatgcaggttgtagtgaagatagttgcaaagtaacaaattaagaagggttt |
345 |
Q |
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| T |
8380942 |
aacttctctgcctgatcatataggttgtagtggaggtagttacgaagtaacaaattaagaagtgttt |
8381008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 75 - 238
Target Start/End: Original strand, 53455968 - 53456132
Alignment:
| Q |
75 |
ggtatttctgccaaccgcaaacacactatgatagtctacttgttacattgaattcgaaaaccctgagttgca-ctagagttttacgagcagcctgcagga |
173 |
Q |
| |
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||||| ||| ||||| | |||| ||||||||||| | |||||||||||||||||||||||||| ||| |||| || ||| |||||||||||| ||||||| |
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| T |
53455968 |
ggtatctctcccaacagtaaacgcactatgatagcccacttgttacattgaattcgaaaaccccgagctgcaactggagctttacgagcagcttgcagga |
53456067 |
T |
|
| Q |
174 |
taaactctaatgcatcagtatactccacttgaattgtccgaatttttctgaggtagaagaaataa |
238 |
Q |
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| T |
53456068 |
gagactcttttgcatctgtatactccaattgaatagtccggattttcccgaggtagaagagataa |
53456132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 468 - 543
Target Start/End: Original strand, 53456785 - 53456860
Alignment:
| Q |
468 |
agatgcagtaacatcaacagttcttctgttcacgttcttcagccaagcaaaactagccgagggacaagctttggcc |
543 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| || | ||||||||||||| |
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| T |
53456785 |
agatgcaataacatcaacagttcttctgttcacattcttcagccaagcaacactagctgaagaacaagctttggcc |
53456860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 53456409 - 53456480
Alignment:
| Q |
279 |
aacttctctgcttggtcatgcaggttgtagtgaagatagttgcaaagtaacaaattaagaagggtttactga |
350 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||| ||| | ||||||||||||||||| |||| |
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| T |
53456409 |
aacttctctgcctggtcatataggttgtagtgaagatagttgcgaagcagcaaattaagaagggtttcctga |
53456480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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