View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11447_low_11 (Length: 485)
Name: NF11447_low_11
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 86 - 475
Target Start/End: Complemental strand, 20701499 - 20701110
Alignment:
| Q |
86 |
gtattgtccataccaactaagttaagcttatgatccttaaatattgcaaaagtgttcgaatacggtgcgatcttgcaaaagttacgagctagaaagtgta |
185 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20701499 |
gtattgtccataccaactgagttaagcatatgattcttaactattgcaaaagtgttagaatagggtgcgatcttgcaaaagttactagctagaaagtgta |
20701400 |
T |
|
| Q |
186 |
actattgcaaaatcattctggttcactgtgattctgacatatatttaaaattgaaagacatgaaaaattctacaattgcaacctaaaacttgaaataaac |
285 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20701399 |
actattgcaaaatcatactggttcaccgtgattctaacatatatttaaaattgaaagacatgaaaaattctacaattgcaacctaaaacttgaaataaac |
20701300 |
T |
|
| Q |
286 |
attggtgatagataattacctggaagaacccaaggatcaaatttatacaaatcaatttcagcaataattggcaaagaaaaatgatgtcctgcaactttac |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20701299 |
attggtgatagataattacctggaagaacccaaggatcaaatttatacaaatcaatttcagcaataattggcaaagaaaaatgatgtcctgcaactttac |
20701200 |
T |
|
| Q |
386 |
gacatagatactgaacaagaagctcctcatcagtggggaagaatctgaaaccaggtggtaaactcaactgtgaaagaggatctctctctg |
475 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20701199 |
gacatagatattgaacaagaagctcctcatcagtggggaagaatctgaaaccaggtggtaaactcaactgtgaaagaggatctctctctg |
20701110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 301 - 457
Target Start/End: Complemental strand, 33727723 - 33727567
Alignment:
| Q |
301 |
ttacctggaagaacccaaggatcaaatttatacaaatcaatttcagcaataattggcaaagaaaaatgatgtcctgcaactttacgacatagatactgaa |
400 |
Q |
| |
|
|||| |||||||| ||| || || ||||| || | ||||||||||||||| ||| | | |||||||||||| || || ||||| ||||||||||| |||| |
|
|
| T |
33727723 |
ttacttggaagaatccatgggtcgaatttgtagagatcaatttcagcaatgatttgaagagaaaaatgatgaccagctactttgcgacatagatattgaa |
33727624 |
T |
|
| Q |
401 |
caagaagctcctcatcagtggggaagaatctgaaaccaggtggtaaactcaactgtg |
457 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| |||||||| ||||||||||| |||| |
|
|
| T |
33727623 |
caagaagctcttcatcagtggggtaaaatctaaaaccaggaggtaaactcaattgtg |
33727567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University