View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11447_low_12 (Length: 471)
Name: NF11447_low_12
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 462
Target Start/End: Original strand, 30550893 - 30551339
Alignment:
| Q |
20 |
atagcaaggtttcgaacttgtgtgttttcgaatgt-----cattaactaaatctcattaatcatttgagccgaaccatgtgcttaagttatgaacttgtg |
114 |
Q |
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| T |
30550893 |
atagcaaggcttcgaacttgtgtgttttcgaatgtttcttcattaactaaatctcattaatcatttgagctgaaccatgtgcttaagttatggacttata |
30550992 |
T |
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| Q |
115 |
gttacatatgatactatagannnnnnnactacaacatagttgttgaacactgtcatttattatgtgtaccaggtgcttttgtaggtagtcatggattcac |
214 |
Q |
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| T |
30550993 |
gttacatatgatacgatagatttttttactacaacatagttgttgaacactgtc-tttgttatgtgtaccaggttcttttgtaggtagtcatggattcac |
30551091 |
T |
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| Q |
215 |
caagggaaacaacagaaggagaaagagatttgattagcacgttacatgaaagcattcttagtcagatcctgtctttcattccaatcgtagacgcggttag |
314 |
Q |
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| T |
30551092 |
caagggaaacaatagaaggagaaagagatatgattagcacattacatgaaagcattcttagtcagatcctgtctttcattccgatcgtagacgcggttag |
30551191 |
T |
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| Q |
315 |
cactagcgtcttatcaagaagatgggttgatgtttggaaatgcataaccaatctagattttgatgatagtttgcttggttctagaaagaaaaggatgcaa |
414 |
Q |
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| T |
30551192 |
cactagcgtcttatcaagaagatgggttgatgtttggaaatgcataaccaatctagattttgatgatagtttgcttggttctagaaagaaaaggatgcaa |
30551291 |
T |
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| Q |
415 |
aaggaacagtttgtgaattttgttgaaaaagtgcttattcatctcact |
462 |
Q |
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| T |
30551292 |
aaggaacagtttgtgaattttgttgaaaaagtgcttattcatttcact |
30551339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 218 - 455
Target Start/End: Original strand, 30559802 - 30560038
Alignment:
| Q |
218 |
gggaaacaacagaaggagaaagagatttgattagcacgttacatgaaagcattcttagtcagatcctgtctttcattccaatcgtagacgcggttagcac |
317 |
Q |
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| T |
30559802 |
gggaaacatcagtaggagaaagagaat-gattagcactttacatgaaagcattcttggtcacatcctatctttcattccaattgtagacacggttagcac |
30559900 |
T |
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| Q |
318 |
tagcgtcttatcaagaagatgggttgatgtttggaaatgcataaccaatctagattttgatgatagtttgcttggttctagaaagaaaaggatgcaaaag |
417 |
Q |
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| T |
30559901 |
tagcgtcttatcaagatgatggattgaagattcgacatccataaccagactaaagtttgatgatagtttgtttggttctatgaagaaaaaaatgaaaaag |
30560000 |
T |
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| Q |
418 |
gaacagtttgtgaattttgttgaaaaagtgcttattca |
455 |
Q |
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| T |
30560001 |
gaacagtttgtgaattttgttgaaaaagtgcttattca |
30560038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 30559691 - 30559757
Alignment:
| Q |
144 |
tacaacatagttgttgaacactgtcatttattatgtgtaccaggtgcttttgtaggtagtcatggattc |
212 |
Q |
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| T |
30559691 |
tacaacagagtagctgaacactgtcatttatt--gtgaatcaggtgcttttgtaagtagtcatggattc |
30559757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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