View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11447_low_13 (Length: 431)
Name: NF11447_low_13
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 14128700 - 14129105
Alignment:
| Q |
1 |
attatagtgctaaataggagatgaaagactcgtatagtaaacaattgtgatatagagaagaatgaagtggtgcttgaaacaatttcttaaaattctagat |
100 |
Q |
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| T |
14128700 |
attatagtgctaacaaggagatgagagactcgtatagtaaacaattgtgatatagagaagaatgaagtggtgctagaaacaatttcttaaaattctagat |
14128799 |
T |
|
| Q |
101 |
cggttttnnnnnnnnnnnnnnnntattggatctatattcccctaaatttattagtagaagtggaaataaaaacatgaaaattagagaagagtcgtaagtt |
200 |
Q |
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| T |
14128800 |
tggttttaaaaaagaaacaaaaatattggatctatattcccctaaatttattagtagaagtggaaataaaaacatgaaaattagagaagagtcgtaagtt |
14128899 |
T |
|
| Q |
201 |
accgaatgcagatctgttccaaacattacactatcatttatgtttctaaaaacgagtagtgcttgtattacctttgtattttgacagtttattttgaagg |
300 |
Q |
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| T |
14128900 |
accgaatgcagatctgttccaaacattatactatcatttatgtttctaaaaacgagtagtgcttgtattacctttgtattttgacagtttattttgaagg |
14128999 |
T |
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| Q |
301 |
tgtctacagtatccgacaccaatgcaatttcttattatataacattcaatcaagttatcgtcgaaaattattgcatgtgttgacaagtaaatataatgtc |
400 |
Q |
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| T |
14129000 |
cgtctacagt-----------atgcaatttcttattatataacattcaatcaagttatcgtcgaaaattattgcatgtgtttacaagtaaatataatgtc |
14129088 |
T |
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| Q |
401 |
gggtgtctgtgtctgtg |
417 |
Q |
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| T |
14129089 |
gggtgtctgtgtatgtg |
14129105 |
T |
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