View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11447_low_19 (Length: 294)

Name: NF11447_low_19
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11447_low_19
NF11447_low_19
[»] chr7 (11 HSPs)
chr7 (1-294)||(4631389-4631682)
chr7 (1-281)||(4667403-4667671)
chr7 (63-125)||(4637378-4637440)
chr7 (63-125)||(4711584-4711646)
chr7 (63-125)||(4864446-4864508)
chr7 (50-127)||(4654004-4654081)
chr7 (61-125)||(4696702-4696766)
chr7 (61-124)||(4644214-4644277)
chr7 (50-119)||(4783353-4783422)
chr7 (50-119)||(4815782-4815851)
chr7 (63-127)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (63-279)||(18925109-18925319)


Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 4631389 - 4631682
Alignment:
Q  1 acacaatctcaattccgttgatgaaagctaaaccatttaattggtttgtgtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631389 acacaatctcaattccgttgatgaaagctaaaccatttaattggtttgtgtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaat 4631488  T
Q  101 ttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaaagtctttgagaagggtaaggttggttcctactttgact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631489 ttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaaagtctttgagaagggtaaggttggttcctactttgact 4631588  T
Q  201 gtgaagagggcgttggaggtttcaatgtgttgatacgaatacgatgttgggtaaaaatagaggcgaagaaaaatagggccattggtgatggaag 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4631589 gtgaagagggcgttggaggtttcaatgtgttgatacgaatacgatgttggataaaaatagaggcgaagaaaaatagggccattggtgatggaag 4631682  T

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Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 4667403 - 4667671
Alignment:
Q  1 acacaatctcaattccgttgatgaaagctaaaccatttaattggtttgtgtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaat 100  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||      |||||||||||||||| || ||| |||||   | |     |    
T  4667403 acacaatctcaattccgttgatgaaagcaaaagcatttaattggtttgtgttt------ttgggaatgaaagttacgtctagtttctccccttgtttggt 4667496  T
Q  101 ttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaaagtctttgagaagggtaaggttggttcctactttgact 200  Q
     || ||||||||||||||||||||||||||| ||||||||| ||||||||| || ||  |||||||||||||||||||||||||||||||||||||||||    
T  4667497 atggatgcaatattctttggtgattgtcttgttatcgtttggaagccaaagtgaagggctaaagtctttgagaagggtaaggttggttcctactttgact 4667596  T
Q  201 gtgaagagggcgttggaggtttcaatgtgttgatacgaatacgatgttgggtaaaaatagaggcgaagaaaaatagggcca 281  Q
    |||||||| |||||||||||||||| || |||      |||||||||||||||||||| |||||||||||||| |||||||    
T  4667597 gtgaagagagcgttggaggtttcaaagttttg------atacgatgttgggtaaaaatggaggcgaagaaaaacagggcca 4667671  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 4637378 - 4637440
Alignment:
Q  63 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 125  Q
    ||||||||||||||||||| ||| ||||||||    |||||||||||||||||||||||||||    
T  4637378 ggaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatattctttggtgatt 4637440  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 4711646 - 4711584
Alignment:
Q  63 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 125  Q
    ||||||||||||||| ||||||||||||||||    ||||| |||||||||||||||||||||    
T  4711646 ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgatt 4711584  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 4864446 - 4864508
Alignment:
Q  63 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 125  Q
    |||||||||||||||||||||||||||||||     ||||| |||||||||||||||||||||    
T  4864446 ggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctttggtgatt 4864508  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 4654004 - 4654081
Alignment:
Q  50 gtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgt 127  Q
    |||||| || |||||||||||||||||||||||||||| ||| ||    | ||| |||||||||||||||||||||||    
T  4654004 gtttgtgttgttgggaatgaaagttatgtttagcttcttattcggttggacttggatgcaatattctttggtgattgt 4654081  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 4696766 - 4696702
Alignment:
Q  61 tgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 125  Q
    ||||||||||||||||||||| ||||||||||||     |||| |||||||||||||||||||||    
T  4696766 tgggaatgaaagttatgtttaacttctcatttggtttggtttgaatgcaatattctttggtgatt 4696702  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 4644214 - 4644277
Alignment:
Q  61 tgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgat 124  Q
    |||||||||||||||||||||||||||||||||    |||||| |||||||| |||||| ||||    
T  4644214 tgggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaatactctttgatgat 4644277  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 4783422 - 4783353
Alignment:
Q  50 gtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttg 119  Q
    |||||| || ||||||||||||||||||||||||||||| |||||    ||||| ||| |||||||||||    
T  4783422 gtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctttg 4783353  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 4815851 - 4815782
Alignment:
Q  50 gtttgtatttttgggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttg 119  Q
    |||||| || ||||||||||||||||||||||||||||| |||||    ||||| ||| |||||||||||    
T  4815851 gtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctttg 4815782  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 4673224 - 4673288
Alignment:
Q  63 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgt 127  Q
    ||||||||| ||||||||||||||||||| ||    ||||| || ||| ||||||||||||||||    
T  4673224 ggaatgaaatttatgtttagcttctcattgggcttgatttggatacaaaattctttggtgattgt 4673288  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 279
Target Start/End: Complemental strand, 18925319 - 18925109
Alignment:
Q  63 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaa 162  Q
    |||||||||||||| |||| ||||||| ||||    ||||  | ||| || ||||| |||||||||||| ||||||||  ||||||||| | ||| ||||    
T  18925319 ggaatgaaagttatatttaacttctcagttggtttcattttgaggcagtactctttcgtgattgtcttgttatcgttttgaagccaaagtgcggggttaa 18925220  T
Q  163 agtctttgagaagggtaaggttggttcctactttgactgtgaagagggcgttggaggtttcaatgtgttgatacgaatacgatgttgggtaaaaatagag 262  Q
    |||| ||||||||||| |  |||||||| |||||||| ||||||||||||| | ||||||||| || |||      ||||||||||||||||||||  ||    
T  18925219 agtcattgagaagggtgacattggttccaactttgacggtgaagagggcgtcgaaggtttcaaagttttg------atacgatgttgggtaaaaatgaag 18925126  T
Q  263 gcgaagaaaaatagggc 279  Q
    |||||||||||||||||    
T  18925125 gcgaagaaaaatagggc 18925109  T

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