View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11447_low_22 (Length: 260)
Name: NF11447_low_22
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4631673 - 4631911
Alignment:
| Q |
1 |
gtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggattagctttggctt |
100 |
Q |
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| T |
4631673 |
gtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggattagctttggctt |
4631772 |
T |
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| Q |
101 |
tgaaagacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagatagtatcgttgaa |
200 |
Q |
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| T |
4631773 |
tgaaagacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagatagtatcgttgaa |
4631872 |
T |
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| Q |
201 |
gtggccacaattcactgctaaaatatcatacaagctgtt |
239 |
Q |
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| T |
4631873 |
gtggccacaattcactgctaaaatatcatacaagctgtt |
4631911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 4667683 - 4667907
Alignment:
| Q |
9 |
agaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggattagctttggctttgaaagac |
108 |
Q |
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| T |
4667683 |
agaaaatgagaatgtgaaatcggaaaatgatatacgtgcagaggaaaatggaatatgattaacagaatcagagttaggattagctttggcttttacagat |
4667782 |
T |
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| Q |
109 |
gggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagatagtatcgttgaagtggccac |
208 |
Q |
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| T |
4667783 |
atga------tttgtggttcaatgacagagaagagtttggtatcatcattgtccccaacccaggttcgattttcaaagatagtatctatggaatgaccac |
4667876 |
T |
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| Q |
209 |
aattcactgctaaaatatcatacaagctgtt |
239 |
Q |
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| T |
4667877 |
aatttacagctaaaacatcatatgagctgtt |
4667907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 18925098 - 18924874
Alignment:
| Q |
6 |
ggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggattagctttggctttgaaa |
105 |
Q |
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||||| ||| ||||||||||| || ||||| ||||||||||| ||||| || |||||| | ||||||| |||||||||||| || | ||||| ||||| | |
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| T |
18925098 |
ggaaggaaatgagaatgtgaagttggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatcagagttagggttgggtttggatttgata |
18924999 |
T |
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| Q |
106 |
gacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagatagtatcgttgaagtggc |
205 |
Q |
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| T |
18924998 |
gatgaaaattcagtctgtggttcaatgatagagaatagtttggtgtcatccatgtcaccaacccaggttcgattttcaaatgttgtatctatggagtggc |
18924899 |
T |
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| Q |
206 |
cacaattcactgctaaaatatcata |
230 |
Q |
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||||||||| |||||| ||||||| |
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| T |
18924898 |
cacaattcagggctaaattatcata |
18924874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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