View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11447_low_3 (Length: 714)
Name: NF11447_low_3
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 640
Target Start/End: Complemental strand, 8158014 - 8157399
Alignment:
| Q |
15 |
atgaagttggagaagccagagaggtagaaacctgcactattgcaaataatacccccaaaaccagctcgggttgaagttccaatacaacttcagtctacgt |
114 |
Q |
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| T |
8158014 |
atgaagttggagaagctagagaggtagaaacctgcactattgcgaataatacccccaaagacagctctagttggagttccaatacaacttccgtctacgt |
8157915 |
T |
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| Q |
115 |
taatgatatgatagagattattattgttgttccattcaaccatgcgatctgaaggagcaataccactgttactctaaaagctcgatttaattttaattct |
214 |
Q |
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| T |
8157914 |
taatgatatgatagagattattattgttgttccatttaaccatgcgatctgaaggagcaataccactg--------aaagcttgatctaattttaattct |
8157823 |
T |
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| Q |
215 |
gaatgttgatgcaaagacgagttgaggaccaggttttattactaagacacattgtattgcaataaataataactaaattatgatagnnnnnnnnnnngga |
314 |
Q |
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| T |
8157822 |
gaatgttgatgctaagacgagttggggactaggttttattactccgacacatcgtattgcaataaataaaaaataaattatgatag---aaaaaagagga |
8157726 |
T |
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| Q |
315 |
gcaaattttggagggaatttggatgaataaaaagatgacacttataa-nnnnnnnaataaaaataacattactttaatatagtagatatggtagattagt |
413 |
Q |
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| T |
8157725 |
gcaaattttggagggaatttggatgaataaaaagatgacacttataattttttttaataaaaataacattactttaatatagtagatatggtagattagt |
8157626 |
T |
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| Q |
414 |
cattttgcaaacctgannnnnnnnngttaatactataatgcgctgtcaatataaagttattttacgg--nnnnnnnntgatatgttgtcacaccatttaa |
511 |
Q |
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| T |
8157625 |
cattttgcaaacttga-tttttgttgttaatactataatgccctgtcaacataaagttattttacagacgcatacaatgatattttgtcaca-catttaa |
8157528 |
T |
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| Q |
512 |
tgtgtttaaattaacgtgagatcaaattgatgcgtgtataacataactttacattgttttttcaagggaaacctatatagaaattgaactttatattttt |
611 |
Q |
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| T |
8157527 |
tgtgtttaaattgacgtgagatcaaattgatgcatgtataacataactttacatcgttttttcaagagaaacctatatagaaattgaactttatattttt |
8157428 |
T |
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| Q |
612 |
aagcgagaaattaaactctattataaagt |
640 |
Q |
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| T |
8157427 |
aagcgagaaattaaactctattataaagt |
8157399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 660 - 698
Target Start/End: Complemental strand, 8157105 - 8157067
Alignment:
| Q |
660 |
gaaaaaactgtatgcgtgctatgtggatggatggtattg |
698 |
Q |
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| T |
8157105 |
gaaaaaactgtatgcgtgctatgtggatggatggtattg |
8157067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 666
Target Start/End: Complemental strand, 8157378 - 8157341
Alignment:
| Q |
629 |
ctattataaagtatctattgatgcaatcatggaaaaaa |
666 |
Q |
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| T |
8157378 |
ctattataaagtatctattggtgcaatcatggaaaaaa |
8157341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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