View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11447_low_6 (Length: 558)
Name: NF11447_low_6
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11447_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 210 - 547
Target Start/End: Complemental strand, 18893874 - 18893541
Alignment:
| Q |
210 |
caattcaaagcatatataacttggtcattaagttttggcttcaaacttgtgttatataaaccctacgtacgtagtttagagacatgttatatannnnnnn |
309 |
Q |
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| T |
18893874 |
caattcaaagcatatataacttggtcattaagttttggcttcaaacttgtgttatataaaccctacgta----gtttagagacatgttatatattttttt |
18893779 |
T |
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| Q |
310 |
cttcatttgtgaatcacaatttcacaaatggagaatggtgaaaacctaagttcattctatactttagacaatgctcaagagaagagtatctctcatgtcc |
409 |
Q |
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| T |
18893778 |
cttcatttgtgaatcacaatttcacaaatggagaatggtgaaaacctaagttcattctatactttagacaatgctcaagagaagagtatctctcatgtcc |
18893679 |
T |
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| Q |
410 |
ctcaaaattttgtaattccaaacatgcatagaccaaatttggaaacaaaatatgctagtcttgctgttgttgatatggctgctcttaagaatggatcagc |
509 |
Q |
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| T |
18893678 |
ctcaaaattttgtaattccaaacatgcatagaccaaatttggaaacaaaatatgctaatcttgctgttgttgatatggctgctcttaagaatggctcagc |
18893579 |
T |
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| Q |
510 |
atcaaggtctctagttattcgagaaattcgagattcat |
547 |
Q |
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| T |
18893578 |
atcaaggtctcgtgttattcaagaaattcgagattcat |
18893541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 18894089 - 18893895
Alignment:
| Q |
19 |
taaataccactatgagctcactaaattcatgctttggttttagcaacattctgggctaagtggttttggcccaattgcatagtatttgacagaactattt |
118 |
Q |
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| T |
18894089 |
taaataccactatgagctcactaaattcatgctttggttttagcaacattctgggctaagtggttttggcccaattgcatagtatttgacagaactatga |
18893990 |
T |
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| Q |
119 |
atgttctctagctagttcaacatggaccaaattcatatcaatttattacaaaagtcacttcttgtattctagctcttataatagattatcacaat |
213 |
Q |
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| T |
18893989 |
atgttctctagctagttcaacatggaccaaattcatatcaatttattacaaaagtcacttcttgtattctagctcttataatagattatcacaat |
18893895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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