View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11447_low_7 (Length: 536)

Name: NF11447_low_7
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11447_low_7
NF11447_low_7
[»] chr1 (8 HSPs)
chr1 (1-526)||(13109997-13110523)
chr1 (31-471)||(13097592-13098031)
chr1 (1-299)||(13182783-13183081)
chr1 (299-478)||(13182426-13182605)
chr1 (1-45)||(13097529-13097573)
chr1 (468-508)||(20288030-20288071)
chr1 (473-514)||(21697151-21697192)
chr1 (478-514)||(26932582-26932618)
[»] chr8 (4 HSPs)
chr8 (476-514)||(34608656-34608694)
chr8 (470-514)||(29197290-29197334)
chr8 (467-514)||(29233782-29233830)
chr8 (477-514)||(38701937-38701974)
[»] chr3 (2 HSPs)
chr3 (474-514)||(31577415-31577455)
chr3 (477-514)||(51187965-51188002)
[»] chr6 (1 HSPs)
chr6 (479-514)||(9952192-9952227)
[»] chr2 (4 HSPs)
chr2 (478-513)||(19368595-19368630)
chr2 (467-496)||(15977196-15977225)
chr2 (473-509)||(10857647-10857683)
chr2 (482-514)||(40939098-40939130)
[»] chr7 (3 HSPs)
chr7 (477-514)||(37858330-37858367)
chr7 (477-514)||(45863021-45863058)
chr7 (478-514)||(36203995-36204031)
[»] chr5 (1 HSPs)
chr5 (473-509)||(5187854-5187890)


Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 13109997 - 13110523
Alignment:
Q  1 ccttgggggacagatgaagtaattatgatgacgaaggaactagttaatgacagttaactactaactccgaattacgctacgcctatggaaatgccgcttt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13109997 ccttgggggacagatgaagtaattatgattacgaaggaactagttaatgacagttaactactaactcctaattacgctacgcctatggaaatgccgcttt 13110096  T
Q  101 gcattaaaactcaaatcaacactgaaagtgattagtggttaaaagatttctttatttggaaaatggagtgtcgattatgcaacggtgtttcaataaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13110097 gcattaaaactcaaatcaacactgaaagtgattagtggttaaaagatttctttatttggaaaatggagtgtcgattatgcaacggtgtttcaataaatta 13110196  T
Q  201 gtaaatatattaaccatgatttaactcatcatggttcgttcgctttcattttgttagctgttactctattaattattacgttaatcagtttgttgacaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13110197 gtaaatatattaaccatgatttaactcatcatggttcgttcgctttcattttgttagctgttactctattaattattacgttaatcagtttgttgacaac 13110296  T
Q  301 taattatcatattgctattgccataatatggttcagttgctaaactgttattgtgtttattaagctaactagataaaaaattatctgaaaagatttcaac 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13110297 taattatcatattgctattgccataatatggttcagttgctaaactgttattgtgtttattaagctaactagttaaaaaattatctgaaaagatttcaac 13110396  T
Q  401 aatggcataaatgacggtggcagtttagtggaagaagactgcgttaatcgattcaaaaatattggcttttaatttttaggcttaattgcactttt-gacc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||    
T  13110397 aatggcataaatgacggtggcagtttagtggaagaagactgcgttaatcaattcaaaaaaattggcttttaatttttaggtttaattgcacttttggacc 13110496  T
Q  500 catatctttttaaaatagtctcctatg 526  Q
    ||||||||||||||| |||| ||||||    
T  13110497 catatctttttaaaagagtcccctatg 13110523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 31 - 471
Target Start/End: Original strand, 13097592 - 13098031
Alignment:
Q  31 acgaaggaactagttaatgacagttaactactaactccgaattacgctacgcctatggaaatgccgctttgcattaaaactcaaatcaacactgaaagtg 130  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13097592 acgaaggaactagttaatgacagttaactactaactcctaattacgctacgcctatggaaatgccgctttgtattaaaactcaaatcaacactgaaagtg 13097691  T
Q  131 attagtggttaaaagatttctttatttggaaaatggagtgtcgattatgcaacggtgtttcaataaattagtaaatatattaaccatgatttaactcatc 230  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  13097692 attagtggttaaaagatttctttatttggaaaatggagtatcgattatgcaacggtgtttcaataaattagtaaatattttgaccatgatttaactcatc 13097791  T
Q  231 atggttcgttcgctttcattttgttagctgttactctattaattattacgttaatcagtttgttgacaactaattatcatattgctattgccataatatg 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13097792 atggttcgttcgctttcattttgttagctgttactctattaattattacgttaatcagtttgttgacaactaattatcatattgctattgccat-atatg 13097890  T
Q  331 gttcagttgctaaactgttattgtgtttattaagctaactagataaaaaattatctgaaaagatttcaacaatggcataaatgacggtggcagtttagtg 430  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13097891 gttcagttgctaaactgttattgtgtttattaagctaactagttaaaaaattatctgaaaagatttcaacaatggcataaatgacggtggcagtttagtg 13097990  T
Q  431 gaagaagactgcgttaatcgattcaaaaatattggctttta 471  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  13097991 gaagaacactgcgttaatcaattcaaaaatattggctttta 13098031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 13183081 - 13182783
Alignment:
Q  1 ccttgggggacagatgaagtaattatgatgacgaaggaactagttaatgacagttaactactaactccgaattacgctacgcctatggaaatgccgcttt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  13183081 ccttgggggacagatgaagtaattatgattacgaaggaactagttaatgacagttaactactaactcctaattacgctacgtctatggaaatgccgcttt 13182982  T
Q  101 gcattaaaactcaaatcaacactgaaagtgattagtggttaaaagatttctttatttggaaaatggagtgtcgattatgcaacggtgtttcaataaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13182981 gcattaaaactcaaatcaacactgaaagtgattagtggttaaatgatttctttatttggaaaatggagtgtcgattatgcaacggtgtttcaataaatta 13182882  T
Q  201 gtaaatatattaaccatgatttaactcatcatggttcgttcgctttcattttgttagctgttactctattaattattacgttaatcagtttgttgacaa 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13182881 gtaaatatattaaccatgatttaactcatcatggttcgttcgctttcattttgttagctgttactcaattaattattacgttaatcagtttgttgacaa 13182783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 299 - 478
Target Start/End: Complemental strand, 13182605 - 13182426
Alignment:
Q  299 actaattatcatattgctattgccataatatggttcagttgctaaactgttattgtgtttattaagctaactagataaaaaattatctgaaaagatttca 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  13182605 actaattatcatattgctattgccataatatggttcagttgctaaactgttattgtgtttattaagctaactagttaaaaaattatttgaaaagctttca 13182506  T
Q  399 acaatggcataaatgacggtggcagtttagtggaagaagactgcgttaatcgattcaaaaatattggcttttaattttta 478  Q
    ||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  13182505 acagtggcataaatgtcggtggcagtttagtggaagaagactacgttaatcaattgaaaaatattggcttttaattttta 13182426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13097529 - 13097573
Alignment:
Q  1 ccttgggggacagatgaagtaattatgatgacgaaggaactagtt 45  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  13097529 ccttgggggacagatgaagtaattatgattacgaaggaactagtt 13097573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 20288071 - 20288030
Alignment:
Q  468 tttaatttttaggcttaattgcactttt-gacccatatcttt 508  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  20288071 tttaatatttaggcttaattgcacttttggacccatatcttt 20288030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 21697192 - 21697151
Alignment:
Q  473 tttttaggcttaattgcacttttgacccatatctttttaaaa 514  Q
    |||||||||| ||||||||||||||||| |||||||| ||||    
T  21697192 tttttaggctcaattgcacttttgacccctatcttttcaaaa 21697151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 478 - 514
Target Start/End: Original strand, 26932582 - 26932618
Alignment:
Q  478 aggcttaattgcacttttgacccatatctttttaaaa 514  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  26932582 aggcttaattgcacttttgacccctatcttttcaaaa 26932618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 476 - 514
Target Start/End: Complemental strand, 34608694 - 34608656
Alignment:
Q  476 ttaggcttaattgcacttttgacccatatctttttaaaa 514  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34608694 ttaggcttaattgcacttttgacccatatctttttaaaa 34608656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 29197290 - 29197334
Alignment:
Q  470 taatttttaggcttaattgcacttttgacccatatctttttaaaa 514  Q
    |||| |||||||||||||||||||||||||| |||||||| ||||    
T  29197290 taatatttaggcttaattgcacttttgacccctatcttttcaaaa 29197334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 514
Target Start/End: Complemental strand, 29233830 - 29233782
Alignment:
Q  467 ttttaatttttaggcttaattgcactttt-gacccatatctttttaaaa 514  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  29233830 ttttaatttttaggcttaattgcacttttggacctctatctttttaaaa 29233782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 514
Target Start/End: Complemental strand, 38701974 - 38701937
Alignment:
Q  477 taggcttaattgcacttttgacccatatctttttaaaa 514  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  38701974 taggcttaattgcacttttgacccctatcttttcaaaa 38701937  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 31577415 - 31577455
Alignment:
Q  474 ttttaggcttaattgcacttttgacccatatctttttaaaa 514  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  31577415 ttttaggtttaattgcacttttgacccctatctttttaaaa 31577455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 514
Target Start/End: Complemental strand, 51188002 - 51187965
Alignment:
Q  477 taggcttaattgcacttttgacccatatctttttaaaa 514  Q
    |||||||||||||||||||||||  |||||||||||||    
T  51188002 taggcttaattgcacttttgacctctatctttttaaaa 51187965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 514
Target Start/End: Complemental strand, 9952227 - 9952192
Alignment:
Q  479 ggcttaattgcacttttgacccatatctttttaaaa 514  Q
    |||||||||||||||||||||| |||||||||||||    
T  9952227 ggcttaattgcacttttgacccctatctttttaaaa 9952192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 513
Target Start/End: Original strand, 19368595 - 19368630
Alignment:
Q  478 aggcttaattgcacttttgacccatatctttttaaa 513  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19368595 aggcttaattgcacttttgacccctatctttttaaa 19368630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 496
Target Start/End: Original strand, 15977196 - 15977225
Alignment:
Q  467 ttttaatttttaggcttaattgcacttttg 496  Q
    ||||||||||||||||||||||||||||||    
T  15977196 ttttaatttttaggcttaattgcacttttg 15977225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 10857683 - 10857647
Alignment:
Q  473 tttttaggcttaattgcacttttgacccatatctttt 509  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  10857683 tttttaggcttaattgcacttttggcccctatctttt 10857647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 514
Target Start/End: Complemental strand, 40939130 - 40939098
Alignment:
Q  482 ttaattgcacttttgacccatatctttttaaaa 514  Q
    ||||||||||||||||||| |||||||||||||    
T  40939130 ttaattgcacttttgacccctatctttttaaaa 40939098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 514
Target Start/End: Complemental strand, 37858367 - 37858330
Alignment:
Q  477 taggcttaattgcacttttgacccatatctttttaaaa 514  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  37858367 taggcttaattgcacttttgacccctatcttttcaaaa 37858330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 514
Target Start/End: Original strand, 45863021 - 45863058
Alignment:
Q  477 taggcttaattgcacttttgacccatatctttttaaaa 514  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  45863021 taggcttaattgcacttttgacccctatcttttcaaaa 45863058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 478 - 514
Target Start/End: Original strand, 36203995 - 36204031
Alignment:
Q  478 aggcttaattgcacttttgacccatatctttttaaaa 514  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  36203995 aggcttaattgcacttttgacccctatctttctaaaa 36204031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 5187890 - 5187854
Alignment:
Q  473 tttttaggcttaattgcacttttgacccatatctttt 509  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  5187890 tttttaggcttaattgcacttttgccccttatctttt 5187854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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