View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11447_low_9 (Length: 529)

Name: NF11447_low_9
Description: NF11447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11447_low_9
NF11447_low_9
[»] chr1 (2 HSPs)
chr1 (20-112)||(49033713-49033805)
chr1 (20-112)||(28442925-28443018)
[»] chr6 (5 HSPs)
chr6 (20-109)||(17436042-17436132)
chr6 (37-112)||(31522534-31522610)
chr6 (62-104)||(25400844-25400886)
chr6 (68-109)||(32275802-32275843)
chr6 (32-112)||(35060889-35060970)
[»] chr8 (4 HSPs)
chr8 (20-112)||(9384619-9384712)
chr8 (20-112)||(23558965-23559058)
chr8 (37-112)||(33220786-33220862)
chr8 (62-112)||(33220027-33220076)
[»] chr2 (2 HSPs)
chr2 (20-112)||(939562-939655)
chr2 (32-112)||(12969258-12969338)
[»] chr7 (2 HSPs)
chr7 (20-112)||(26604155-26604248)
chr7 (44-109)||(20379674-20379740)
[»] chr4 (3 HSPs)
chr4 (17-112)||(36217873-36217969)
chr4 (32-112)||(33164499-33164580)
chr4 (64-112)||(53267828-53267876)
[»] chr3 (1 HSPs)
chr3 (32-112)||(6162676-6162757)
[»] scaffold0041 (1 HSPs)
scaffold0041 (20-112)||(24347-24440)
[»] chr5 (2 HSPs)
chr5 (20-64)||(5504788-5504832)
chr5 (68-112)||(5506722-5506766)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 49033713 - 49033805
Alignment:
Q  20 gcatgttaattaacgctacgcaagttaagttgcgtagaggcatttgaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||    
T  49033713 gcatgttaattaacgctacgcaagttaaattgcgtagaggcatttggacatttactttgggaatgagcggaaccatttgaataatgagcagaa 49033805  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 28443018 - 28442925
Alignment:
Q  20 gcatgttaattaacgctacgcaagttaagttgcgtagaggcatttg-aacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    ||||||||| | ||||||| ||||||||  ||||||| |||||||  ||| |||||||||||||| || |||||||||||| ||||||||||||    
T  28443018 gcatgttaactcacgctacacaagttaacatgcgtaggggcattttcaacttttactttgggaatgagcggaaccatttgattaatgagcagaa 28442925  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 17436132 - 17436042
Alignment:
Q  20 gcatgttaattaacgctacgcaagttaagttgcgtagaggcatttga-acatttactttgggaattagtggaaccatttgaataatgagca 109  Q
    ||||||||| | ||||||||||||||||  ||||||||||||||| | || |||||||||||||| || ||||||||||||||||||||||    
T  17436132 gcatgttaacttacgctacgcaagttaacatgcgtagaggcattttagacttttactttgggaatgagcggaaccatttgaataatgagca 17436042  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 31522534 - 31522610
Alignment:
Q  37 acgcaagttaagttgcgtagaggcattt-gaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    ||||||||||| |||||||| ||||||| |  |||||||||||||||| || |||||||||||  ||||||||||||    
T  31522534 acgcaagttaacttgcgtaggggcatttcggtcatttactttgggaatgagcggaaccatttgggtaatgagcagaa 31522610  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 25400886 - 25400844
Alignment:
Q  62 tttgaacatttactttgggaattagtggaaccatttgaataat 104  Q
    |||||||||||||||||| ||| || |||||||||||||||||    
T  25400886 tttgaacatttactttggaaatgagcggaaccatttgaataat 25400844  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 32275802 - 32275843
Alignment:
Q  68 catttactttgggaattagtggaaccatttgaataatgagca 109  Q
    |||||||||||||||| || ||||||||||| ||||||||||    
T  32275802 catttactttgggaatgagcggaaccatttggataatgagca 32275843  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 35060889 - 35060970
Alignment:
Q  32 acgctacgcaagttaagttgcgtagaggcattt-gaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    |||||||||| |||||  ||||||| ||||||| | ||||||||||||| ||| || |||| ||||||  ||||||||||||    
T  35060889 acgctacgcatgttaacatgcgtaggggcattttggacatttactttggaaatgagcggaatcatttgggtaatgagcagaa 35060970  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 9384712 - 9384619
Alignment:
Q  20 gcatgttaattaacgctacgcaagttaagttgcgtagaggcattt-gaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    ||||||||| | |||||||||| |||||||||||||| | ||||| | ||||||| ||||  ||| || |||||||||||||||||||||||||    
T  9384712 gcatgttaactcacgctacgcatgttaagttgcgtagggacattttggacatttattttgaaaatgagcggaaccatttgaataatgagcagaa 9384619  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 23558965 - 23559058
Alignment:
Q  20 gcatgttaattaacgctacgcaagttaagttgcgtagaggcattt-gaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    ||||||||| | |||||||| |||||||  ||||||| ||||||| | || ||||| |||| ||| || ||||||||||| |||||||||||||    
T  23558965 gcatgttaactcacgctacgtaagttaacatgcgtaggggcattttggacttttaccttggcaatgagcggaaccatttggataatgagcagaa 23559058  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 33220786 - 33220862
Alignment:
Q  37 acgcaagttaagttgcgtagaggcattt-gaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    ||||| |||||  ||||||| ||||||| |||| |||||||||||||| |||| |||||||||  ||||||||||||    
T  33220786 acgcatgttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatgagcagaa 33220862  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 33220076 - 33220027
Alignment:
Q  62 tttgaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    |||||||||||||||||| ||| || ||||||||||| |||||||||||||    
T  33220076 tttgaacatttactttgg-aatgagcggaaccatttggataatgagcagaa 33220027  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 939655 - 939562
Alignment:
Q  20 gcatgttaattaacgctacgcaagttaagttgcgtagaggcattt-gaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    ||||||||| | ||||||| ||||||||||||| | | ||||||| | |||||||| |||||||| || |||| ||||||||||||||||||||    
T  939655 gcatgttaactcacgctacacaagttaagttgcattggggcattttggacatttacattgggaatgagcggaatcatttgaataatgagcagaa 939562  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 12969258 - 12969338
Alignment:
Q  32 acgctacgcaagttaagttgcgtagaggcattt-gaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    |||||||||| |||||  ||||||| ||||||| |||| |||||||||| ||| || ||||||||||  |||||||||||||    
T  12969258 acgctacgcatgttaacatgcgtaggggcattttgaacttttactttgg-aatgagcggaaccatttagataatgagcagaa 12969338  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 26604155 - 26604248
Alignment:
Q  20 gcatgttaattaacgctacgcaagttaagttgcgtagaggcatttgaa-catttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    ||||||||| | |||||||| |||||||  ||||||| ||||||| || | ||||||||| |||| || |||||||||||| ||||||||||||    
T  26604155 gcatgttaactcacgctacgtaagttaacatgcgtaggggcattttaaacttttactttgagaatgagcggaaccatttgagtaatgagcagaa 26604248  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 20379674 - 20379740
Alignment:
Q  44 ttaagttgcgtagaggcattt-gaacatttactttgggaattagtggaaccatttgaataatgagca 109  Q
    ||||||||||||| ||||||| | || |||||||||||||| || ||||||||||  ||||||||||    
T  20379674 ttaagttgcgtaggggcattttggacttttactttgggaatgagcggaaccatttagataatgagca 20379740  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 36217969 - 36217873
Alignment:
Q  17 agtgcatgttaattaacgctacgcaagttaagttgcgtagaggca-tttgaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    |||||||||||| | |||||||| |||||||  ||||||| |||| |||| || |||||||||||||| |||  |||||||||| ||| ||||||||    
T  36217969 agtgcatgttaactcacgctacgtaagttaacatgcgtaggggcattttggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaa 36217873  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 33164499 - 33164580
Alignment:
Q  32 acgctacgcaagttaagttgcgtagaggcattt-gaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    |||||||||| |||||  ||||||| ||||||| | |||||||||||| |||| || |||||||||||  ||||||||||||    
T  33164499 acgctacgcatgttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaa 33164580  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 53267828 - 53267876
Alignment:
Q  64 tgaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    |||||||||||||||| ||| |||||||||||||| ||| || ||||||    
T  53267828 tgaacatttactttggaaatgagtggaaccatttggatattgtgcagaa 53267876  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 6162676 - 6162757
Alignment:
Q  32 acgctacgcaagttaagttgcgtagaggcattt-gaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    |||||||||| |||||  ||||||| ||||||| | || |||||||||||||| || |||||||||||  ||||||||||||    
T  6162676 acgctacgcatgttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaa 6162757  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 24347 - 24440
Alignment:
Q  20 gcatgttaattaacgctacgcaagttaagttgcgtagaggca-tttgaacatttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    ||||||||| | ||||||||||||||||  ||||||| |||| ||| ||| |||||||||||||| || |  ||  ||||| ||||||||||||    
T  24347 gcatgttaactcacgctacgcaagttaacatgcgtaggggcattttaaacttttactttgggaatgagcgatactgtttgagtaatgagcagaa 24440  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 5504832 - 5504788
Alignment:
Q  20 gcatgttaattaacgctacgcaagttaagttgcgtagaggcattt 64  Q
    ||||||||| | ||||||||||||||||  |||||||||||||||    
T  5504832 gcatgttaactcacgctacgcaagttaacatgcgtagaggcattt 5504788  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 5506722 - 5506766
Alignment:
Q  68 catttactttgggaattagtggaaccatttgaataatgagcagaa 112  Q
    |||||||||||||||| |||| | ||| |||||||||||||||||    
T  5506722 catttactttgggaatgagtgaatccagttgaataatgagcagaa 5506766  T

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