View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11448_high_11 (Length: 324)
Name: NF11448_high_11
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11448_high_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 73 - 324
Target Start/End: Complemental strand, 3163250 - 3163003
Alignment:
| Q |
73 |
ttcgaacttgtaataccccatatttatccatggagctcgagttcagactcgagctacccctcttctatgcattaannnnnnnnnnnnnnnagagtttcgt |
172 |
Q |
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| T |
3163250 |
ttcgaacttgtaataccccatatttatccatggagctcgagttcatactcgagctacccct-ttctatgcattaagtgtgtgtgtg----agagtttcgt |
3163156 |
T |
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| Q |
173 |
agataaaaattttagtcaaaaaa-gacatgcttaccacgggtaactctttgcagaagatgaaatatcttagtctagcaaatatatctaacaaaaaatggc |
271 |
Q |
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| T |
3163155 |
agataaaaaatttagtcaaaaaaagacatgcttaccacgggtaactctttgcagaagatgaaatatcttagtctagcaaatatatctaacaaaaaatggc |
3163056 |
T |
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| Q |
272 |
caccactaatatgacaatgaacatggagagacatctttcccttcaccttcttc |
324 |
Q |
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| T |
3163055 |
caccactaatatgacaatgaacatggagagacatctttcccttcaccttcttc |
3163003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 3163348 - 3163268
Alignment:
| Q |
16 |
aatatttcggatcttatagaaaaagtaaaataagtgtggagacatatctctagtgaattcgaacttgtaataccccatatt |
96 |
Q |
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| T |
3163348 |
aatatttcggatcttatagaaaaagtaaaataagtgtggagacatatctctagtgaattcgaacttgtaataccccatatt |
3163268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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