View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11448_high_12 (Length: 267)

Name: NF11448_high_12
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11448_high_12
NF11448_high_12
[»] chr2 (3 HSPs)
chr2 (74-189)||(3083038-3083153)
chr2 (74-183)||(38403833-38403939)
chr2 (194-257)||(17833577-17833643)
[»] scaffold0036 (1 HSPs)
scaffold0036 (74-183)||(99423-99529)
[»] chr1 (3 HSPs)
chr1 (98-189)||(40909811-40909902)
chr1 (74-149)||(33814017-33814092)
chr1 (74-149)||(33873487-33873562)
[»] chr4 (1 HSPs)
chr4 (185-217)||(50233471-50233503)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 3083038 - 3083153
Alignment:
Q  74 ttgcttctggtttgtaaggcaacaggtttgctacttacaaggatgtccaaattttggtgtgctgctttattcatttaggggctgagaatgaggagactgc 173  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||| |||||    
T  3083038 ttgcttctggtttgtaaggcagctggtttgttacttacaaggatgtccaatttttggtgttctgctttattcatttaggggtggagaatgaggaaactgc 3083137  T
Q  174 tattggagttgacata 189  Q
    |||||||||| |||||    
T  3083138 tattggagttaacata 3083153  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 38403833 - 38403939
Alignment:
Q  74 ttgcttctggtttgtaaggcaacaggtttgctacttacaaggatgtccaaattttggtgtgctgctttattcatttaggggctgagaatgaggagactgc 173  Q
    ||||||||||||||||||||| |||||||  ||||||||| ||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||    
T  38403833 ttgcttctggtttgtaaggcagcaggtttattacttacaatgatgtccaatttttggtgtgct---ttattcatttaggggctgagaatgaggagactgc 38403929  T
Q  174 tattggagtt 183  Q
     |||||||||    
T  38403930 cattggagtt 38403939  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 17833577 - 17833643
Alignment:
Q  194 ttgataatgacacaatcataagta---gtatgtgtcatttcgtagatatcatgtccttgaacctatg 257  Q
    |||| ||| |||||||||||||||   |||||||||||||| ||||||||||  || ||||||||||    
T  17833577 ttgaaaattacacaatcataagtagtagtatgtgtcatttcttagatatcattaccctgaacctatg 17833643  T

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Target: scaffold0036 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 99423 - 99529
Alignment:
Q  74 ttgcttctggtttgtaaggcaacaggtttgctacttacaaggatgtccaaattttggtgtgctgctttattcatttaggggctgagaatgaggagactgc 173  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||    
T  99423 ttgcttctggtttgtaaggcagcaggtttattacttacaaggatgtccaatttttggtg---tgctttattcatttaggggctgagaatgaggagactgc 99519  T
Q  174 tattggagtt 183  Q
     |||||||||    
T  99520 cattggagtt 99529  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 40909811 - 40909902
Alignment:
Q  98 ggtttgctacttacaaggatgtccaaattttggtgtgctgctttattcatttaggggctgagaatgaggagactgctattggagttgacata 189  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||    
T  40909811 ggtttgttacttacaaggatgtccaatttttggtgttctgctttattcatttaggggcggagaataaggaaactgctattggagttaacata 40909902  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 33814017 - 33814092
Alignment:
Q  74 ttgcttctggtttgtaaggcaacaggtttgctacttacaaggatgtccaaattttggtgtgctgctttattcattt 149  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||    
T  33814017 ttgcttctggtatgtaaggcagcaggtttgttacttacaaggatgttcaatttttggtgtgctgctttattcattt 33814092  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 33873487 - 33873562
Alignment:
Q  74 ttgcttctggtttgtaaggcaacaggtttgctacttacaaggatgtccaaattttggtgtgctgctttattcattt 149  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||    
T  33873487 ttgcttctggtatgtaaggcagcaggtttgttacttacaaggatgttcaatttttggtgtgctgctttattcattt 33873562  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 50233503 - 50233471
Alignment:
Q  185 acataatggttgataatgacacaatcataagta 217  Q
    ||||||||||||| |||||||||||||||||||    
T  50233503 acataatggttgaaaatgacacaatcataagta 50233471  T

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