View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11448_high_13 (Length: 254)
Name: NF11448_high_13
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11448_high_13 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 38184320 - 38184556
Alignment:
| Q |
18 |
aagaacggtgcgacaaaacctccacctgactacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38184320 |
aagaacggtgcgacaaaacctccacctgactacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcactatc |
38184419 |
T |
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| Q |
118 |
accctcctcttctttttgttgcataactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgt |
217 |
Q |
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| T |
38184420 |
accctcctcttctttttgttgcataactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgt |
38184519 |
T |
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| Q |
218 |
ctcttggacaaaatagcaagagtaccaaatgaaacat |
254 |
Q |
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| T |
38184520 |
ctcttggacaaaatagcaagagtaccaaatgaaacat |
38184556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 38179651 - 38179887
Alignment:
| Q |
18 |
aagaacggtgcgacaaaacctccacctgactacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
38179651 |
aagaacggtgcgacaaaacctccacctgactacaccatttcactatcttcccattaacattcctctcaagctcctctctacaacttaactcatcactatc |
38179750 |
T |
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| Q |
118 |
accctcctcttctttttgttgcataactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgt |
217 |
Q |
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| T |
38179751 |
accctcctcttctttttgttgcataactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgt |
38179850 |
T |
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| Q |
218 |
ctcttggacaaaatagcaagagtaccaaatgaaacat |
254 |
Q |
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| T |
38179851 |
ctattggacaaaatagcaagagtaccaaatgaaacat |
38179887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 38169837 - 38170073
Alignment:
| Q |
18 |
aagaacggtgcgacaaaacctccacctgactacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||| | |||||| ||| |
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| T |
38169837 |
aagaacggtgcgacaaaacctccacctgactacaccattttactatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatc |
38169936 |
T |
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| Q |
118 |
accctcctcttctttttgttgcataactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgt |
217 |
Q |
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| T |
38169937 |
aacttcttcttctttttgttgttgtaattttttatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgt |
38170036 |
T |
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| Q |
218 |
ctcttggacaaaatagcaagagtaccaaatgaaacat |
254 |
Q |
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|| || ||||||| ||||||||||||||||||||||| |
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| T |
38170037 |
cttttagacaaaacagcaagagtaccaaatgaaacat |
38170073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 35053988 - 35053919
Alignment:
| Q |
161 |
acccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaa |
230 |
Q |
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| T |
35053988 |
acccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaa |
35053919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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