View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11448_high_5 (Length: 418)
Name: NF11448_high_5
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11448_high_5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 38179488 - 38179887
Alignment:
| Q |
19 |
ccttcctcatcacgttccatcctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccatag |
118 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38179488 |
ccttcctcatcacattccatcctcaccccagtcttccacacatcttcaattaactttgcattagtggtttgatctgtccactgaggaaatgcaaccatag |
38179587 |
T |
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| Q |
119 |
gaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacca |
218 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38179588 |
gaacccctgaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacctaaagaacggtgcgacaaaacctccacctgactacacca |
38179687 |
T |
|
| Q |
219 |
tttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataactttttcatct |
318 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38179688 |
tttcactatcttcccattaacattcctctcaagctcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataactttttcatct |
38179787 |
T |
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| Q |
319 |
ctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38179788 |
ctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctattggacaaaatagcaagagtaccaaatgaaacat |
38179887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Original strand, 38184158 - 38184556
Alignment:
| Q |
20 |
cttcctcatcacgttccatcctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccatagg |
119 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
38184158 |
cttcctcatcacgttccaccctcaacccagtcttccacaaatcttcaattaactttgcattagtagtttgatctgtccactggggaaatgctaccatagg |
38184257 |
T |
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| Q |
120 |
aacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184258 |
aacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccat |
38184357 |
T |
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| Q |
220 |
ttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataactttttcatctc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184358 |
ttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataactttttcatctc |
38184457 |
T |
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| Q |
320 |
taattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacat |
418 |
Q |
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| T |
38184458 |
taattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacat |
38184556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 38169674 - 38170073
Alignment:
| Q |
19 |
ccttcctcatcacgttccatcctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccatag |
118 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169674 |
ccttcctcatcatgttccatcctcaacccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccatag |
38169773 |
T |
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| Q |
119 |
gaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169774 |
gaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacca |
38169873 |
T |
|
| Q |
219 |
tttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataactttttcatct |
318 |
Q |
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||| |||||||||||||| | ||| |||||||||||||||||||||| | |||||| |||| | || |||||||||||||| | ||||| |||| |
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| T |
38169874 |
ttttactatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttcttctttttgttgttgtaattttttatct |
38169973 |
T |
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| Q |
319 |
ctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacat |
418 |
Q |
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||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
38169974 |
ctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacat |
38170073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 233
Target Start/End: Complemental strand, 35060987 - 35060794
Alignment:
| Q |
40 |
ctcaccccagtcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccataggaacccctgaacccaaacttt |
139 |
Q |
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|||||||| ||||||||||||||||||||| || |||||||| ||||||| ||||| ||||||||||| || | |||||||| || ||||||||| |
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| T |
35060987 |
ctcacccctatcttccacacatcttcaattagttttgcattagtcttttgatcagtccattgaggaaatgccactagtggaaccccagataccaaacttt |
35060888 |
T |
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| Q |
140 |
ccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccatttcactatcttccc |
233 |
Q |
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|||||||||| ||||| |||||||| |||| |||||||||||| ||| || || | ||||||||| ||| |||||| |||||||||||||| |
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| T |
35060887 |
ccaaagtcgagttccaaccacaatgagtcaaaaaacaacccaatgaagaatgggaaagaacctccacttgagaacaccacttcactatcttccc |
35060794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 35054239 - 35054056
Alignment:
| Q |
50 |
tcttccacacatcttcaattaacttcgcattagtggtttgatctgtccactgaggaaatgcaaccataggaacccctgaacccaaactttccaaagtcga |
149 |
Q |
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||||||||||||||||||||||||| |||||||| | ||||||||||| || ||||| || ||||||||||||||| |||| ||||||||||| || |
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| T |
35054239 |
tcttccacacatcttcaattaactttgcattagtcatctgatctgtccattgtggaaacgccaccataggaaccccttttaccaagctttccaaagttga |
35054140 |
T |
|
| Q |
150 |
attccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccatttcactatcttccc |
233 |
Q |
| |
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|||||| ||||| || |||| |||||||||||| ||| | || || | || ||||| ||| ||||||||||||||||||||| |
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| T |
35054139 |
attccaaccacagtgtgtcaaaaaacaacccaatgaaggatgtgaaagaatctccatttgagaacaccatttcactatcttccc |
35054056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 35053988 - 35053919
Alignment:
| Q |
325 |
acccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaa |
394 |
Q |
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||||||||||| ||||||| |||||||||| ||| || ||||||||||| ||||||||| ||||||| |
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| T |
35053988 |
acccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaa |
35053919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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