View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11448_high_8 (Length: 367)
Name: NF11448_high_8
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11448_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 38180023 - 38180380
Alignment:
| Q |
1 |
cgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180023 |
cgattggtatcattttgatcttaccaacgtcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttc |
38180122 |
T |
|
| Q |
101 |
atctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaat |
200 |
Q |
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| T |
38180123 |
atatagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaat |
38180222 |
T |
|
| Q |
201 |
gacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccg |
300 |
Q |
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| T |
38180223 |
gacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgacgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaactg |
38180322 |
T |
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| Q |
301 |
ttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
358 |
Q |
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| T |
38180323 |
ttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
38180380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 38184692 - 38185049
Alignment:
| Q |
1 |
cgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38184692 |
cgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactgtagggttggtttcttc |
38184791 |
T |
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| Q |
101 |
atctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaat |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38184792 |
atctagaacttgaatttgttctttgaaagatcgagtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaat |
38184891 |
T |
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| Q |
201 |
gacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccg |
300 |
Q |
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| T |
38184892 |
gacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgttcatgaaagtaataatagtagatatcaaaaaccg |
38184991 |
T |
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| Q |
301 |
ttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
358 |
Q |
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| T |
38184992 |
ttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgc |
38185049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 38170209 - 38170563
Alignment:
| Q |
1 |
cgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||||||||| ||||||||| | |||||| ||||||| |
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| T |
38170209 |
cgatgggtatcattttgatcttaccaacatcaactttattcagtgcatccagttcaaactcctcaacggtgttcacaagtactcttgggttgatttcttc |
38170308 |
T |
|
| Q |
101 |
at-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaa |
199 |
Q |
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|| | | |||| ||||||| ||||||| |||| || ||| | ||||||| ||||||||| |||||||||||||||||||| || |||| ||||||||| |
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| T |
38170309 |
attcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaa |
38170407 |
T |
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| Q |
200 |
tgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaacc |
299 |
Q |
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||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||| ||| |
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| T |
38170408 |
tgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatgtagtcaccgtgttcatgaaagtaataatagaatatatcaaacacc |
38170507 |
T |
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| Q |
300 |
gttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctt |
355 |
Q |
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||||| ||||||||||| || || | ||||||||||||||||||| |||||||||| |
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| T |
38170508 |
gttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgccacctt |
38170563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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