View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11448_low_1 (Length: 460)
Name: NF11448_low_1
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11448_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 27225155 - 27224980
Alignment:
| Q |
19 |
tagtgatatatctgtacactaaggaaaaactatgggtgttatataaatgaggtatttggaatcttcagaaggagttttcagggaacgtgaagtgaaagat |
118 |
Q |
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| T |
27225155 |
tagtgatatatccgtacactgaggaaaaactatgggt---atataaatgaggtatttggaatcttcagaaggagttttcagggaacgtgaagtgaaagat |
27225059 |
T |
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| Q |
119 |
gtgccaagaagaggagatttgataacggtacaattgaaaggattcctagaatgagatcaagtattggcaacaatatgtt |
197 |
Q |
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| T |
27225058 |
gtgccaagaagaggagattttataacggtacaattgaaaggattcctagaatgagatcaagtattggcaacaatatgtt |
27224980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 332 - 448
Target Start/End: Complemental strand, 27224981 - 27224865
Alignment:
| Q |
332 |
tttgacgcttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaactaattagatta |
431 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27224981 |
tttgacacttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatgacacatgagcttttgtgttagctaaaactaattagatta |
27224882 |
T |
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| Q |
432 |
gtctatgccaagttcat |
448 |
Q |
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| T |
27224881 |
gtctatgcgaagttcat |
27224865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 259283 - 259108
Alignment:
| Q |
19 |
tagtgatatatctgtacactaaggaaaaactatgggtgttatataaatgaggtatttggaatcttcagaaggagttttcagggaacgtgaagtgaaagat |
118 |
Q |
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| T |
259283 |
tagtgatatatccgtacactgaggaaaaactatgggt---atataaatgaggtatttggaatcttcagaaggagttttcagggaacgtgaagtgaaagat |
259187 |
T |
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| Q |
119 |
gtgccaagaagaggagatttgataacggtacaattgaaaggattcctagaatgagatcaagtattggcaacaatatgtt |
197 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
259186 |
gtgccaagaagaggagattttataacggtacaattgaaaggattcctagaatgagatcaagtattggcaacaatatgtt |
259108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 332 - 448
Target Start/End: Complemental strand, 259109 - 258993
Alignment:
| Q |
332 |
tttgacgcttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaactaattagatta |
431 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
259109 |
tttgacacttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatgacacatgagcttttgtgttagctaaaactaattagatta |
259010 |
T |
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| Q |
432 |
gtctatgccaagttcat |
448 |
Q |
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|||||||| |||||||| |
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| T |
259009 |
gtctatgcgaagttcat |
258993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 333 - 434
Target Start/End: Original strand, 21740047 - 21740148
Alignment:
| Q |
333 |
ttgacgcttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaactaattagattag |
432 |
Q |
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||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||||| || ||||| | ||||||||| |||||| |||||| |
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| T |
21740047 |
ttgacgcttccttttccaggcatttgaacaaggtaggaataggtatatgtttaagagatgacacaagaacttttatcttagctaaagctaattggattag |
21740146 |
T |
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| Q |
433 |
tc |
434 |
Q |
| |
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|| |
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| T |
21740147 |
tc |
21740148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 433
Target Start/End: Complemental strand, 10421402 - 10421302
Alignment:
| Q |
333 |
ttgacgcttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaactaattagattag |
432 |
Q |
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||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| ||| |||||| |
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| T |
10421402 |
ttgacgcttccttttcaaggcatctgaacaaggtaggaataggtatatgtttaagagatggcacaggagcttttgttttagctaaaactgattggattag |
10421303 |
T |
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| Q |
433 |
t |
433 |
Q |
| |
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| |
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| T |
10421302 |
t |
10421302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 26381693 - 26381624
Alignment:
| Q |
352 |
gcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaact |
421 |
Q |
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|||||| |||||||| || ||||| |||||| |||||||| ||||||| | ||||| |||||||||||| |
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| T |
26381693 |
gcacttaaacaaggttggtataggaatatgtataagagatgacacatgtacatttgtcttagctaaaact |
26381624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 5634761 - 5634830
Alignment:
| Q |
352 |
gcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaact |
421 |
Q |
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|||||| |||||||| || ||||| |||||| |||||||| ||||||| | ||||| |||||||||||| |
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| T |
5634761 |
gcacttaaacaaggttggtataggaatatgtataagagatgacacatgtacgtttgtcttagctaaaact |
5634830 |
T |
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