View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11448_low_15 (Length: 213)
Name: NF11448_low_15
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11448_low_15 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 44006535 - 44006747
Alignment:
| Q |
1 |
acccatgctctgtttcatctcctctgcttttccaacctccaaagaaaacattaacaaacacaacacaatattgaataaattactattaaaattgattaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006535 |
acccatgctctgtttcatctcctctgcttttccaacctccaaagaaaacattaacaaacacaacacaatattgaataaattactattaaaattgattaac |
44006634 |
T |
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| Q |
101 |
aagtactaattcttgttttcaataacagtttcactacatgaagattctcatatagttgttatacaaaaccaagaacaagaaataaagataagagaatagt |
200 |
Q |
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| T |
44006635 |
aagtactaattcttgttttcaataacagtttcactacatgaagattctcatatagttgttatacaaaaccaagaacaagaaataaagataagagaatagt |
44006734 |
T |
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| Q |
201 |
agtggcaatcatc |
213 |
Q |
| |
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||||||||||||| |
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| T |
44006735 |
agtggcaatcatc |
44006747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 33168656 - 33168868
Alignment:
| Q |
1 |
acccatgctctgtttcatctcctctgcttttccaacctccaaagaaaacattaacaaacacaacacaatattgaataaattactattaaaattgattaac |
100 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33168656 |
acccatgctctgtttcatctcctctgcttttacatgctccaaagaaaacattaacaaacacaacacaatattgaataaattactattaaaattgattaac |
33168755 |
T |
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| Q |
101 |
aagtactaattcttgttttcaataacagtttcactacatgaagattctcatatagttgttatacaaaaccaagaacaagaaataaagataagagaatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||||| | |||||| |
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| T |
33168756 |
aagtactaattcttgttttcaataacagtttcactacatgaagattctcaaatagttcttatacaaaaccaaaaacaagaaataatgataacataatagt |
33168855 |
T |
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| Q |
201 |
agtggcaatcatc |
213 |
Q |
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||||||||||||| |
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| T |
33168856 |
agtggcaatcatc |
33168868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 19803078 - 19802873
Alignment:
| Q |
4 |
catgctctgtttcatctcctctgcttttccaacctccaaagaaaacattaacaaacacaacacaatattgaataaattactattaaaattgattaacaag |
103 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19803078 |
catgctctgtttcacgtcctctgcttttccaacgtccaaagaaaacat----caacacaacacaatattgaataaattactattaaaattgattaacaag |
19802983 |
T |
|
| Q |
104 |
tactaattcttgttttcaataacagtttcactacatgaagattctcatatagttgttatacaaaaccaagaacaagaaataaagataagagaatagtagt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
19802982 |
tactaattcttgttttcaataacagtttcactacatgaagattctcatatagttattatacaaaaccaagaacaagatataaagataacagaatagtagt |
19802883 |
T |
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| Q |
204 |
ggcaatcatc |
213 |
Q |
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|||||||||| |
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| T |
19802882 |
ggcaatcatc |
19802873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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