View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11448_low_2 (Length: 458)
Name: NF11448_low_2
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11448_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 38 - 442
Target Start/End: Complemental strand, 41241915 - 41241511
Alignment:
| Q |
38 |
atcaatttgcgcttttattttggaacggtttgaatttaaacactgattgaactctctttcgaggatctcacacttgatagtaattattacatgggaaggg |
137 |
Q |
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| T |
41241915 |
atcaatttgcgcttttattttggaacggtttgaatttaaacaccgacagaactctctttcgaggatctcacacttgatagtaattattacatgggaaggg |
41241816 |
T |
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| Q |
138 |
tcataagaattgagaagatgatgatgaggatatcaaacgagcctgatcaatcacaatgaccaatatagatattaaggcgacacctatgtggaatatgaac |
237 |
Q |
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| T |
41241815 |
tcataagaattgagaagatgatgaggaggatatcaaacaagcctgatcaatcacaatgaccaatatagatattaaggcgacacctatgtagaatatgaac |
41241716 |
T |
|
| Q |
238 |
ccttgaaacttgaactgggaacaacatagatccaagtatcatgagcatgaatcaggtacctacctattaagtcccccggagtacaaccttgacgaataca |
337 |
Q |
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| T |
41241715 |
ccttgaaacttgaactgggaacaacatagatccaagtatcatgagcatgaatcaggtacgtacctattcagtcccccggagtacaaccttgacgaataca |
41241616 |
T |
|
| Q |
338 |
cagtcaacaacaaaaataaacaaattaacctaaacataatgggaaggacccaaaaacaaa----catgtttagaggccaaggtaatgtggcagccctgct |
433 |
Q |
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| T |
41241615 |
cagtcaacaacaaaaataagca----aacctaaacataatgggaaggacccaaaaacaaacatgcatgtttagaggccaaggtaatgtggcagccctgct |
41241520 |
T |
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| Q |
434 |
gcctatctg |
442 |
Q |
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| T |
41241519 |
gcctatctg |
41241511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 41246003 - 41246072
Alignment:
| Q |
180 |
ctgatcaatcacaatgaccaatatagatattaaggcgacacctatgtggaatatgaacccttgaaacttg |
249 |
Q |
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| T |
41246003 |
ctgagcaatcacaatgaccaatagaggtattaaggcgacgccgatgtgaaacctgaacccttgaaacttg |
41246072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 35672226 - 35672268
Alignment:
| Q |
38 |
atcaatttgcgcttttattttggaacggtttgaatttaaacac |
80 |
Q |
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| T |
35672226 |
atcaatttgcgattttattttggatcggtttgaatttgaacac |
35672268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 41074868 - 41074831
Alignment:
| Q |
43 |
tttgcgcttttattttggaacggtttgaatttaaacac |
80 |
Q |
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|||||| |||||||||||||||||||| |||||||||| |
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| T |
41074868 |
tttgcggttttattttggaacggtttggatttaaacac |
41074831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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