View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11448_low_3 (Length: 443)

Name: NF11448_low_3
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11448_low_3
NF11448_low_3
[»] chr8 (6 HSPs)
chr8 (27-426)||(44306588-44306987)
chr8 (30-426)||(43896137-43896533)
chr8 (27-426)||(44301480-44301881)
chr8 (32-413)||(44312372-44312753)
chr8 (41-91)||(43895619-43895669)
chr8 (41-91)||(44306043-44306093)
[»] chr4 (1 HSPs)
chr4 (30-420)||(18701741-18702135)
[»] chr3 (1 HSPs)
chr3 (30-420)||(4084249-4084645)
[»] chr6 (1 HSPs)
chr6 (40-420)||(8158829-8159230)
[»] chr5 (2 HSPs)
chr5 (189-267)||(35856724-35856802)
chr5 (292-404)||(35856591-35856703)
[»] chr7 (1 HSPs)
chr7 (43-86)||(15040305-15040348)
[»] chr2 (1 HSPs)
chr2 (199-255)||(10541388-10541444)


Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 27 - 426
Target Start/End: Original strand, 44306588 - 44306987
Alignment:
Q  27 agtaggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca 126  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306588 agtaggaacatcggcagaagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca 44306687  T
Q  127 gcatgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcat 226  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306688 gcatgagcttcatcaacatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcat 44306787  T
Q  227 ccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatact 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306788 ccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatact 44306887  T
Q  327 tccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacaccctccctaagt 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44306888 tccagacaattcaattttctcaccattcttatttagatcaagagcataattactaacatcgattggacttggcaaatacctaattacaccctccctaagt 44306987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 426
Target Start/End: Original strand, 43896137 - 43896533
Alignment:
Q  30 aggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagca 129  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  |||| ||| |||||||||    
T  43896137 aggaacatcggcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaatagcatctaacacaataataatctctccagca 43896236  T
Q  130 tgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatcct 229  Q
    |||||||||||| | | |||||||| |||||||||||||||| ||||   | ||||||||||||||| |||||||||||||||||||||||||||| |||    
T  43896237 tgagcttcatcaacttcctcaatcttatcatcatgtctcttaaacaaacgaggaatctgaatcttcttaccagtgttaacatttgtaataaaatcaccct 43896336  T
Q  230 tcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttcc 329  Q
    |||||||||||||||||||||||||||||||||||| |||  ||    |  |||    |||||||||| ||||||||||||||||||||||||| |||||    
T  43896337 tcttaataacaccctgatagattcttagataagttactaatccatcattcctaatcacatttgtgaaaacctttgcaacaaatggcgcatcaatgcttcc 43896436  T
Q  330 agacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacaccctccctaagt 426  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||| |||||    
T  43896437 agacaattcaactttctcaccattcctattttgatcaagagcataattactaacatcgattggacccggcaaatacctaattacaccctccataagt 43896533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 27 - 426
Target Start/End: Original strand, 44301480 - 44301881
Alignment:
Q  27 agtaggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca 126  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |  | | ||||  ||||||||||||||     
T  44301480 agtaggaacatcggcagaagacattgtatatctaacagacccatcagtaaaagtatctccagatttaagaacaatagctaacacaataacaatttctccg 44301579  T
Q  127 gcatgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcat 226  Q
    ||||||||||||||| || |||||||| ||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||||||||||||||     
T  44301580 gcatgagcttcatcaacaaactcaatcacatcatcatgtctcttagacaagctataaatctgaatcttctcaccagtgttaacatttgtaataaaatcac 44301679  T
Q  227 ccttcttaataacaccctgatagattcttagataagttaataag------tcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatc 320  Q
    ||||||| |||||||||||||||||||||||| ||||||| |||      |||||||  |  |    |||||||||| ||||||| ||||||||||||||    
T  44301680 ccttcttgataacaccctgatagattcttagacaagttaa-aagaatccatcactccaataca---aatttgtgaaaacctttgctacaaatggcgcatc 44301775  T
Q  321 aatacttccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacaccctcc 420  Q
    || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||    
T  44301776 aacacttccagacaattcaactttctcaccattcttattttgatcaagagcataattactaacatcgattggactcggcaaatacctaattacatcctcc 44301875  T
Q  421 ctaagt 426  Q
     |||||    
T  44301876 ataagt 44301881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 32 - 413
Target Start/End: Original strand, 44312372 - 44312753
Alignment:
Q  32 gaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatg 131  Q
    ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |||| | ||||  | ||||||||||||||||||    
T  44312372 gaacatcggcagaagtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaacacaaaaacaatttctccagcatg 44312471  T
Q  132 agcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttc 231  Q
    |||||||||| | | || ||||| | ||| ||||||||||| |||   | |||||| |||||||| |||||||||||| ||||||||||||||| |||||    
T  44312472 agcttcatcaacttccttaatcttaccataatgtctcttacccaaacaaggaatcttaatcttcttaccagtgttaacgtttgtaataaaatcacccttc 44312571  T
Q  232 ttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccag 331  Q
    ||||||||||||||||||||||||||||||||||||||||  ||  |  ||    ||||||||||| ||||||| ||||||||| |||||| ||||||||    
T  44312572 ttaataacaccctgatagattcttagataagttaataagtacctaatcctatacatatttgtgaaaacctttgctacaaatggctcatcaacacttccag 44312671  T
Q  332 acaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattac 413  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44312672 acaattcaactttctcaccattcttattttgatcaagagcataattactaacatcgattggacttggcaaatacctaattac 44312753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 43895619 - 43895669
Alignment:
Q  41 cagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatt 91  Q
    |||| ||||||| ||||||||||||||||||||  ||||||||||||||||    
T  43895619 cagaggtcattgaatatctaacagacccatcagcaaaagtatctccagatt 43895669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 44306043 - 44306093
Alignment:
Q  41 cagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatt 91  Q
    |||| ||||||| ||||||||| ||||||||||  ||||||||||||||||    
T  44306043 cagaggtcattgaatatctaacggacccatcagcaaaagtatctccagatt 44306093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 420
Target Start/End: Original strand, 18701741 - 18702135
Alignment:
Q  30 aggaacatctgcagaagtcattgtatatctaacagacccat---cagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca 126  Q
    ||||||||| |||||||||||||||||||||||||||||||   | || |||||||||||||||| |||| ||||||| || |  | |||||||||||||    
T  18701741 aggaacatcagcagaagtcattgtatatctaacagacccattggcggtaaaagtatctccagattcaagatgagcatcaaaaacaaaaacaatttctcca 18701840  T
Q  127 gcatgagcttcatcagcatactcaatctcatcatcat-gtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatca 225  Q
    ||||||||||||||| | | ||| || | || | | | ||||||| | |||   | ||||||||||||||| ||||||||||||||||||||||||||||    
T  18701841 gcatgagcttcatcaacttcctcgattttattaacttcgtctcttgcccaaacgaggaatctgaatcttcttaccagtgttaacatttgtaataaaatca 18701940  T
Q  226 tccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatac 325  Q
     |||||||||||||||||||||||||||||||||||||||||  |  |  ||| | | |   |||||  |||||||||||||||||||| ||||||||||    
T  18701941 cccttcttaataacaccctgatagattcttagataagttaatttgaaatacctctcatgccaatttgcaaaagcctttgcaacaaatggtgcatcaatac 18702040  T
Q  326 ttccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacaccctcc 420  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18702041 ttccagacaattcaactttctcaccattcttatttagatcaagagcataattactaacatcgattggacttggcaaatacctaattacaccctcc 18702135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 30 - 420
Target Start/End: Original strand, 4084249 - 4084645
Alignment:
Q  30 aggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaac---aaca---taacaatttct 123  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||| |||   ||||   |||||| ||||    
T  4084249 aggaacatcggcagaagtcattgtatatctaatagacccgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttct 4084348  T
Q  124 ccagcatgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaat 223  Q
    |||||||||||||||||| |   || ||||  || ||||||||||||| ||||   | |||||| |||||||| ||| ||||||||||||||||||||||    
T  4084349 ccagcatgagcttcatcaactgccttaatcgtattatcatgtctcttaaacaaacgaggaatcttaatcttcttaccggtgttaacatttgtaataaaat 4084448  T
Q  224 catccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaat 323  Q
    || ||||||| |||||||||||||||||||||||||||||||||     |  |    || |   || ||||||||||||| |||||||||| ||||||||    
T  4084449 cacccttcttgataacaccctgatagattcttagataagttaattttaaaaacggcctatgccaatatgtgaaagcctttccaacaaatggtgcatcaat 4084548  T
Q  324 acttccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacaccctcc 420  Q
    ||||||| ||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  4084549 acttccaaacaattcaactttctcaccattcctattttgatcatgagcataattactaacatcgattggactcggcaaatacctaattacaccctcc 4084645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 40 - 420
Target Start/End: Complemental strand, 8159230 - 8158829
Alignment:
Q  40 gcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatgagcttcat 139  Q
    |||||||||||| ||||||||||||||||||| || |||||||||||||||| |||| ||||||| ||||  | ||||||||||||||||||||||||||    
T  8159230 gcagaagtcattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcat 8159131  T
Q  140 ------------------cagcatactcaatctcatcat---catgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaat 218  Q
                      || | | |||| |||||||||   || ||||||||| |||   | |||||| |||||||| |||||||||||||||||||||    
T  8159130 caacttccttgattttatcaacttcctcactctcatcatgttcacgtctcttacccaaacgaggaatctcaatcttcttaccagtgttaacatttgtaat 8159031  T
Q  219 aaaatcatccttcttaataacaccctgatagattcttagataagttaat---aagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggc 315  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||   || |   |||| | |  |  | ||  |||||||||||||||||||||     
T  8159030 aaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcctat-acca--agttacgaaagcctttgcaacaaatgga 8158934  T
Q  316 gcatcaatacttccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacac 415  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  8158933 gcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcgattggactcggcaaatacctaattacac 8158834  T
Q  416 cctcc 420  Q
    |||||    
T  8158833 cctcc 8158829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 35856802 - 35856724
Alignment:
Q  189 aatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaat 267  Q
    |||||||||||||||||||||||| |||||||||||  | ||  ||||||| |||||||||||||||||||| ||||||    
T  35856802 aatcttctcaccagtgttaacattagtaataaaatccccttttctaataacgccctgatagattcttagatatgttaat 35856724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 35856703 - 35856591
Alignment:
Q  292 gtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattg 391  Q
    |||||||||  ||| ||||| ||| |||||||||||||||||||||| | |||||| |||||| ||  | ||||||||||||||||||  | ||| ||||    
T  35856703 gtgaaagccaatgcgacaaacggcccatcaatacttccagacaattctactttctctccattcctagcttgatcaagagcataattactcaaatcaattg 35856604  T
Q  392 gacttggcaaata 404  Q
    |||| ||||||||    
T  35856603 gactcggcaaata 35856591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 15040305 - 15040348
Alignment:
Q  43 gaagtcattgtatatctaacagacccatcagtgaaagtatctcc 86  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  15040305 gaagtcattgtatatttaacagacccatcagtaaaagtatctcc 15040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 10541388 - 10541444
Alignment:
Q  199 ccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattctt 255  Q
    ||||||||| ||||||||||||||||  |||||  ||| ||||||| ||||||||||    
T  10541388 ccagtgttatcatttgtaataaaatctcccttccgaatgacaccctcatagattctt 10541444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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