View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11448_low_4 (Length: 423)

Name: NF11448_low_4
Description: NF11448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11448_low_4
NF11448_low_4
[»] chr7 (17 HSPs)
chr7 (1-367)||(23861176-23861543)
chr7 (41-329)||(23864809-23865097)
chr7 (41-307)||(23844034-23844300)
chr7 (2-307)||(23840586-23840891)
chr7 (41-307)||(23857268-23857534)
chr7 (127-307)||(23802490-23802670)
chr7 (127-307)||(23817442-23817622)
chr7 (163-314)||(23791688-23791839)
chr7 (152-307)||(23852930-23853085)
chr7 (195-309)||(23838094-23838208)
chr7 (130-307)||(23807958-23808135)
chr7 (152-307)||(23849059-23849214)
chr7 (152-307)||(23855305-23855460)
chr7 (163-307)||(23828102-23828246)
chr7 (163-254)||(23797963-23798054)
chr7 (127-254)||(23823181-23823308)
chr7 (388-423)||(23861121-23861156)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 23861543 - 23861176
Alignment:
Q  1 gatgtgaaacttttgggagttgtgggaagcccannnnnnngcagggtacagattgcactcaaattcaaaggaattgaatatgaatttgttaaagaagact 100  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23861543 gatgtgaaacttttgggagttgtgggaagcccatttttttgcagggtacagattgcactcaaattcaaaggaattgaatacgaatttgttaaagaagact 23861444  T
Q  101 tgaccaacaaaagtgatcttctcctcaaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgat 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861443 tgacaaacaaaagtgatcttctcctcaaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgat 23861344  T
Q  201 tcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861343 tcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgac 23861244  T
Q  301 aaggtaagttttctaaagcttttatattgtgatcgcgttataatatatcac-atgatatgcacaaaaa 367  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  23861243 aaggtaagttttctaaagcttttatattgtgatcgcgttgtaatatatcacgatgatatgcacaaaaa 23861176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 41 - 329
Target Start/End: Complemental strand, 23865097 - 23864809
Alignment:
Q  41 gcagggtacagattgcactcaaattcaaaggaattgaatatgaatttgttaaagaagacttgaccaacaaaagtgatcttctcctcaaatacaatccggt 140  Q
    |||||||||||||||| || || |  ||||||||||||||  ||| |||| ||||||||||| |||||||||| ||||||||||||| ||||||||| ||    
T  23865097 gcagggtacagattgctcttaagtggaaaggaattgaatacaaatatgttcaagaagacttggccaacaaaagcgatcttctcctcatatacaatccagt 23864998  T
Q  141 tcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccatt 240  Q
    |||||||||  |||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  23864997 tcataagaaggttccagtttttgttcacaatgagaagcctatatcagaatctcttgtgattcttcagtatattgatgaggtttggaaacaaaatcccatt 23864898  T
Q  241 ttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaagttttctaaagcttttatattg 329  Q
    ||  |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||| |||||| ||||    
T  23864897 ttaccgtccgatccataccaaaaatcattggctcgattttggtccaagttcatcgatgacaaggtaaatttcctaaaacttttaaattg 23864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 41 - 307
Target Start/End: Complemental strand, 23844300 - 23844034
Alignment:
Q  41 gcagggtacagattgcactcaaattcaaaggaattgaatatgaatttgttaaagaagacttgaccaacaaaagtgatcttctcctcaaatacaatccggt 140  Q
    |||||||||||||||| ||||| || || ||||||||||||||||||||| ||||| | ||  ||| ||| ||||| |  || |||||||||||||| ||    
T  23844300 gcagggtacagattgctctcaagttgaagggaattgaatatgaatttgttgaagaaaatttagccaccaagagtgaacaacttctcaaatacaatccagt 23844201  T
Q  141 tcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccatt 240  Q
    |||||||||  |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||    
T  23844200 tcataagaaggttccagtttttgttcacaatgagaaacctatatcagaatcccttgtgattcttgagtacattgatgaggtttggaagcaaaaccctatt 23844101  T
Q  241 ttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 307  Q
    ||| | ||||||||| |||||| | | ||||||||||||||||| ||||||||||||||||||||||    
T  23844100 ttgccttctgatccacaccaaagagccttggctcgattttggtcaaaattcatcgatgacaaggtaa 23844034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 23840891 - 23840586
Alignment:
Q  2 atgtgaaacttttgggagttgtgggaagcccannnnnnngcagggtacagattgcactcaaattcaaaggaattgaatatgaatttgttaaagaagactt 101  Q
    |||||||||||||||||| |   |||||||||       |||||||||||||||| || || || || |||||||||||||||||| || ||||| | ||    
T  23840891 atgtgaaacttttgggagctactggaagcccatttgtgtgcagggtacagattgctctaaagttgaagggaattgaatatgaatttcttgaagaaaattt 23840792  T
Q  102 gaccaacaaaagtgatcttctcctcaaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgatt 201  Q
    | |||  || ||||| ||||| || ||||| ||||| |||||||||||  |||||||| ||||||||||||| ||||| || |||||||| |||||||||    
T  23840791 ggccacaaagagtgaacttcttcttaaatataatccagttcataagaaggttccagtttttgttcacaatgataagcccatttcagaatctcttgtgatt 23840692  T
Q  202 cttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgaca 301  Q
    |||||||||||||||||||||||||| ||||| ||||||||| |  |||||||| |||||| | | ||||||||||||||||||||||||||||||||||    
T  23840691 cttgagtacattgatgaggtttggaagcaaaaccccattttgccaactgatccacaccaaagagccttggctcgattttggtcgaaattcatcgatgaca 23840592  T
Q  302 aggtaa 307  Q
    ||||||    
T  23840591 aggtaa 23840586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 41 - 307
Target Start/End: Complemental strand, 23857534 - 23857268
Alignment:
Q  41 gcagggtacagattgcactcaaattcaaaggaattgaatatgaatttgttaaagaagacttgaccaacaaaagtgatcttctcctcaaatacaatccggt 140  Q
    |||||||||||||||| || ||||| || |||||||||||  ||||| || ||||| || || ||||||||||||| ||||| ||||| || ||||| ||    
T  23857534 gcagggtacagattgctctaaaattgaagggaattgaatacaaatttcttgaagaaaacatggccaacaaaagtgaacttcttctcaagtataatccagt 23857435  T
Q  141 tcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccatt 240  Q
    | |||| || || |||||| ||||||||||||| ||||| |||||||| |||||| ||||| ||||||| |||||||||  ||||||||||||||| ||     
T  23857434 ttataaaaagataccagtttttgttcacaatgaaaagcctatatcagagtcccttttgattattgagtatattgatgagacttggaaacaaaatcctatc 23857335  T
Q  241 ttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 307  Q
    ||| | |||||||||||||||| | | ||||||||||||||||| || |||||||| ||||||||||    
T  23857334 ttgccttctgatccataccaaagagccttggctcgattttggtctaacttcatcgacgacaaggtaa 23857268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 307
Target Start/End: Complemental strand, 23802670 - 23802490
Alignment:
Q  127 aaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttgga 226  Q
    |||||||| || ||| |||||||| |||| ||| || |||| ||||| ||||| |||||||| ||||||||||||||||| || |||||||||  |||||    
T  23802670 aaatacaaccctgtttataagaaagttcctgtttttattcataatgataagcccatatcagagtcccttgtgattcttgaatatattgatgagacttgga 23802571  T
Q  227 aacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 307  Q
    ||||||||||||| ||| | |||||||| | | ||| | | |||||||| || ||||| || ||||| ||||| |||||||    
T  23802570 aacaaaatcccatattgccttctgatccttccaaaagagccttggctcgtttctggtccaatttcattgatgataaggtaa 23802490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 307
Target Start/End: Complemental strand, 23817622 - 23817442
Alignment:
Q  127 aaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttgga 226  Q
    |||||||| || ||| |||||||  |||| ||| || |||| ||||| ||||| ||| |||| || |||||||||||||| || |||||||||  |||||    
T  23817622 aaatacaaccctgtttataagaaggttcctgtttttattcataatgataagcctatagcagagtcacttgtgattcttgaatatattgatgagacttgga 23817523  T
Q  227 aacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 307  Q
    |||||||||| || ||| | |||||||||||||||| | | |||| |||||||||||| ||  |||| |||||||||||||    
T  23817522 aacaaaatccaatattgccttctgatccataccaaagagccttggttcgattttggtccaacctcatagatgacaaggtaa 23817442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 23791839 - 23791688
Alignment:
Q  163 gttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaa 262  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||  ||||||||||||||| || ||| | |||||||| ||| |||    
T  23791839 gttcataatgataagcccatatcagaatcccttgtgattcttgagtatattgatgagacttggaaacaaaatcctatcttgccttctgatccttacgaaa 23791740  T
Q  263 aatcattggctcgattttggtcgaaattcatcgatgacaaggtaagttttct 314  Q
     | | |||||||| || ||| | || ||||| ||||| ||||||| ||||||    
T  23791739 gagccttggctcgtttctggaccaagttcatagatgataaggtaatttttct 23791688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 23852930 - 23853085
Alignment:
Q  152 ttccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctga 251  Q
    |||||||||||||||| |||| |||||| || |||||||| | ||||||||||||||| |||||||||| |||||||||||| || || ||| |   |||    
T  23852930 ttccagttcttgttcataatgggaagcctatttcagaatcacgtgtgattcttgagtatattgatgaggcttggaaacaaaaccctatcttgcccaatga 23853029  T
Q  252 tccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 307  Q
    ||| || |||| | | ||||  || |||||||| || ||||| |||||||||||||    
T  23853030 tccttatcaaagagccttggaccgtttttggtctaagttcattgatgacaaggtaa 23853085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 23838094 - 23838208
Alignment:
Q  195 tgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatc 294  Q
    |||||||||||||||||| ||||||  ||||||||||||||| || ||| | |||||||| || |||| | | |||||||| || ||||| || |||||     
T  23838094 tgtgattcttgagtacatcgatgagacttggaaacaaaatcctatcttgccttctgatccttatcaaagagccttggctcgtttctggtctaagttcatt 23838193  T
Q  295 gatgacaaggtaagt 309  Q
    |||||||||||||||    
T  23838194 gatgacaaggtaagt 23838208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 307
Target Start/End: Complemental strand, 23808135 - 23807958
Alignment:
Q  130 tacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaac 229  Q
    ||||| || ||| |||||||| |||| ||| | ||| | ||||| ||||| || || ||||| ||||||||||||||||| |||||||||  ||||||||    
T  23808135 tacaaccctgtttataagaaagttcctgttttagtttataatgacaagcccatctctgaatcacttgtgattcttgagtatattgatgagacttggaaac 23808036  T
Q  230 aaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 307  Q
    |||| || || ||| | |||||||| || |||| | |  ||||||| || ||||| || ||||| |||||||||||||    
T  23808035 aaaaccctatcttgccttctgatccttatcaaagagccatggctcgtttctggtccaatttcattgatgacaaggtaa 23807958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 23849059 - 23849214
Alignment:
Q  152 ttccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctga 251  Q
    |||| ||||||||||| |||| ||| || ||||||||||| | ||||||| ||||||| ||||| |||| ||||||||| || || || ||| | |||||    
T  23849059 ttcctgttcttgttcataatgggaatcccatatcagaatctcgtgtgattattgagtatattgacgaggcttggaaacagaaccctatcttgccttctga 23849158  T
Q  252 tccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 307  Q
    ||| ||| ||| | | |||| ||| |||||||| || ||||| ||||| |||||||    
T  23849159 tccttacaaaagagctttggatcggttttggtcaaagttcattgatgaaaaggtaa 23849214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 23855305 - 23855460
Alignment:
Q  152 ttccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctga 251  Q
    |||| |||||||||||||||||||||||  | ||||| || | ||||||||||||||| |||||||||  |||||||||||| || || ||| | |||||    
T  23855305 ttcctgttcttgttcacaatgagaagcccgtttcagagtctcgtgtgattcttgagtatattgatgagacttggaaacaaaaccctatcttgccttctga 23855404  T
Q  252 tccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 307  Q
    ||| ||| ||| | | |||| ||| |||||| | || ||| | ||||| |||||||    
T  23855405 tccttacaaaagagccttggatcgcttttgggccaagttcctagatgagaaggtaa 23855460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 307
Target Start/End: Complemental strand, 23828246 - 23828102
Alignment:
Q  163 gttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaa 262  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||  |||||||   |||||| |||||||| || ||  | |||||||| ||| |||    
T  23828246 gttcataatgataagcccatatcagaatcccttgtgattcttgagtatgttgatgaaacttggaagcaaaatcctatcttaccttctgatccttacaaaa 23828147  T
Q  263 aatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 307  Q
     | | |||||||| || ||| | || ||||| ||||| |||||||    
T  23828146 gagccttggctcgtttctggacaaagttcatagatgataaggtaa 23828102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 23798054 - 23797963
Alignment:
Q  163 gttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatcc 254  Q
    ||||| ||||| ||||| ||| ||||||| ||||||||| |||| || |||||||||  ||||||||||||||| || ||| | ||||||||    
T  23798054 gttcataatgataagcctatagcagaatctcttgtgattattgaatatattgatgagacttggaaacaaaatcctatcttgccttctgatcc 23797963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 23823308 - 23823181
Alignment:
Q  127 aaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggtttgga 226  Q
    |||||||| || ||| |||||||| |||| ||  | ||||| ||||| || || ||| ||||||| ||||||||| |||| || |||||||||  |||||    
T  23823308 aaatacaaccctgtttataagaaagttcctgtattagttcataatgataaacctatagcagaatctcttgtgattattgaatatattgatgagacttgga 23823209  T
Q  227 aacaaaatcccattttgtcgtctgatcc 254  Q
    |||||||||| || ||| | ||||||||    
T  23823208 aacaaaatccaatcttgccttctgatcc 23823181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 23861156 - 23861121
Alignment:
Q  388 gatgtcacagcccagatcgcagacacgtatattttt 423  Q
    ||||||||||||||||||||||||||||||||||||    
T  23861156 gatgtcacagcccagatcgcagacacgtatattttt 23861121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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